Janthinobacterium sp. HH102: JAB4_049990
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Entry
JAB4_049990 CDS
T08624
Symbol
rhlE_5
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jah
Janthinobacterium sp. HH102
Pathway
jah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JAB4_049990 (rhlE_5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jah03019
]
JAB4_049990 (rhlE_5)
Enzymes [BR:
jah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JAB4_049990 (rhlE_5)
Messenger RNA biogenesis [BR:
jah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JAB4_049990 (rhlE_5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_19
Cas3-like_C_2
HEM4
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QOU75514
LinkDB
All DBs
Position
complement(5569441..5570838)
Genome browser
AA seq
465 aa
AA seq
DB search
MTDQGYTHPTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLMAHASSSMSPAR
HPVRALILTPTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQTVILRGGVEIVIATP
GRLLDHIEQKNISLSQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPE
IKKLAATFLNDPLTIEVARSNQTADKVTQVVYKVTEDQKHALVAHLLRQRDLKQVIVFSN
TKIGASRLARVLEQEGMSATAIHGDKSQQERMAALEAFKKGEIDVLVATDVAARGLDISD
LPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISIYSDKDERLLADIEKLIKQSIKRGEL
TGFNPAPARSGDSERRPPRRSEGGEARPARAPESRHAGDSRDSRSAERGARPAFGPGARR
EKADPWFLKPYEPAKAAAPAAASMAPTAAKPKQKVAALLGGLLKQ
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgaccagggttacacccatccgacaccgatccaggaacaagcgatccccgtggtg
ctgcaaggccgcgatgtgatgggcgccgcgcaaacgggcaccggcaagacggccggtttt
tccttgccgatcatccagttgctgatggcgcacgccagcagcagcatgtcgccggcgcgc
cacccggtgcgcgcgctgatcctcacgccgacgcgtgagctggcggtgcaggtggccgaa
aacgtcaaggcctacgccaagcacacgccgctgcgctcgaccgtcgtcttcggcggcatg
gatatgaagccgcaaaccgtcatcctgcgcggcggcgtggaaatcgtcatcgccacgccg
ggccgcttgctcgaccatatcgagcaaaagaacatcagcctgagccaggtgcagatgctg
gtcatggatgaggccgaccgcatgctggacatgggtttcctgccggacttgcagcgcatc
atcaacttgttgccgaaacagcgccagaacctgatgttctcggccacgttctcgccagaa
atcaagaaactggccgccaccttcctcaacgatccgctgacgatcgaagtggcgcgcagc
aaccagacggccgacaaggtcacgcaagtggtctacaaggtgacggaagaccagaagcat
gccctggtcgcccatctgctgcgccagcgcgacctgaagcaggtcatcgtattctcgaac
accaagatcggcgcttcgcgcctggcccgcgtgctggaacaggaaggcatgagcgccacg
gcgattcacggcgacaagagccagcaggaacgcatggcggcgctggaggcgttcaagaag
ggcgaaatcgacgtgctggtggcgaccgacgtggcggcgcgcggcctggatatttccgac
ctgccttgcgtcatcaacttcgacttgccgtacaacgcggaagattatgtgcaccgcatc
ggccgcacgggccgcgccggcgcctcgggcgacgccatttcgatctactcggataaggac
gagcgcttgctggccgatatcgagaaactcatcaagcaaagcatcaagcgcggcgaattg
acgggcttcaacccggcgcccgcccgcagcggcgacagcgagcgccgtccgccacgccgc
agcgaaggtggcgaggcacgcccggcgcgcgcccccgagagccgccatgccggcgatagc
cgcgacagccgctccgcggagcgcggtgcgcgtcccgcttttggtcccggcgcacgccgc
gaaaaggctgatccctggttcctcaagccatatgagccggccaaggccgcagccccggct
gccgccagcatggcgcctactgcggccaagccgaagcagaaagtggcggcattgctgggt
ggtttgctgaagcaataa
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