Janthinobacterium sp. HH102: JAB4_053420
Help
Entry
JAB4_053420 CDS
T08624
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
jah
Janthinobacterium sp. HH102
Pathway
jah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JAB4_053420 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jah03021
]
JAB4_053420 (rho)
03019 Messenger RNA biogenesis [BR:
jah03019
]
JAB4_053420 (rho)
Transcription machinery [BR:
jah03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JAB4_053420 (rho)
Messenger RNA biogenesis [BR:
jah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JAB4_053420 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
QOU75854
LinkDB
All DBs
Position
5951186..5952448
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GESPEMSKHRILFENLTPLHPNEPLRLEREMNGQENITGRIIDLIAPIGKGQRGLLVASP
KSGKSVILQHIAHAITANHPDITLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNMEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPNELQKIWILRKLLYSMDEIEAMEFILDKMKATKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaaggccctacacgtatccgccctgcttgagatggcgatcggt
cttgacattgacaacgcagcccgcttgcgcaaacaggagctgatgttcgctatcctgaaa
aaacgcgccaagtccggcgaacagatttttggcgacggcgccctggaagtgctgcctgac
ggcttcggcttcctgcgctcgcctgacgccagctacatggcgtccaccgacgatatttac
atctccccttcgcaaatccgccgcttcaatctgcacaccggcgattcgatcgaaggcgag
gtacggaccccgaaagatggcgaacgctatttcgcactggtcaaagtcgacaaggtcaac
ggcgaatcgccggagatgtcgaaacaccgcatcctgtttgaaaacctgacgccgctgcac
ccgaacgagccgctgcgcctggaacgtgaaatgaatggccaggaaaacatcaccggccgc
atcatcgacctgatcgccccgatcggcaaaggccagcgcggcttgctggtggcgtcgccg
aaatccggcaaatccgtaatcctgcagcacatcgcccatgcgatcacggccaaccacccg
gatatcaccctgatcgtgctgctgatcgacgaacgtccggaagaagtgaccgaaatgcaa
cgctcggtacgcggcgaagtcgtcgcctcgaccttcgacgagccggccacgcgccacgtg
caagtggccgagatggtgctggaaaaagccaagcgcctggtcgaaatgaaaaaagacgtg
gtcatcctgctcgactcgatcacccgcctggcacgcgcctacaataccgtcatccctgcc
tcgggcaaggtcctgaccggcggtgtcgacgcgaacgcgctgcaacgtccaaaacgcttc
ttcggcgccgcgcgcaatatcgaagaaggcggctcgctgaccatcatcgccacggcgctg
atcgaaacgggttcgcgcatggatgacgtgatctttgaagaattcaagggtaccggcaac
atggaagtgcatctggaacgccgtttggccgaaaaacgcgtctacccggcaatcaacctg
aacaaatcgggtacccgccgcgaagaactgctgatcaagccgaacgagctgcaaaaaatc
tggatcctgcgtaagttgctgtactcgatggacgagatcgaggcgatggagttcattctc
gacaagatgaaggcgaccaaaaacaacgccgaattcttcgacatgatgcgccggggcggc
taa
DBGET
integrated database retrieval system
