KEGG   Janibacter alittae: V1351_10345
Entry
V1351_10345       CDS       T10540                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
jai  Janibacter alittae
Pathway
jai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    V1351_10345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jai03019]
    V1351_10345
Messenger RNA biogenesis [BR:jai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     V1351_10345
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: WXB75354
UniProt: A0ABZ2ME65
LinkDB
Position
complement(2156335..2158020)
AA seq 561 aa
MSHPHPDLQLPPPLKKGALRVTALGGLGEVGRNMTVIEHDGQLLVVDCGVLFPEDHQPGV
DLILPDFDAIADRLDDIQAIVLTHGHEDHIGAVPYLLKLKPDIPLVGSTLTLALIEAKLK
EHRIKPYTLGVREGGREKFGVFDCEFIAVNHSIPDALALFLRTPGGTLLHTGDFKMDQVP
LDRRLTDLRAFARAGEEGVDLFLTDSTNAEVPGFTTPERDISSSIDDVFRKARRRVIVAC
FSSHVHRVQQVLDAAERSGRKVAMVGRSMVRNMGIAADLGYLHVPDNVLVDVKKLDQLPD
DEVVLVCTGSQGEPMAALSRMANRDHRIDVGEGDTVLLASSLIPGNENAVYRIINGLMRL
GADVVHKGNARVHVSGHASAGELLYCYNIVKPRNVMPVHGEWRHLVANAELAIDTGVDPE
HVVLAEDGVVVDLIDGRARIVGAVPCGYTYVDGSSVGAATEELLKDRRILRDEGFISVMV
VVDSSTGKIVAGPEITARGFAEDEEIFTQVRPKIISAIEEATRKGTTDPHQLQQVVRRAV
GGWVGGKIRRRPMIIPVVVEA
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgagccatccccaccccgacctgcagctgccaccgccgttgaagaagggcgccctgcgc
gtcactgccctcggcggtctcggtgaggtcggccgcaacatgaccgtcatcgagcacgac
ggacagctgctcgtcgttgactgcggtgtcctcttcccggaggaccaccagcccggcgtc
gacctgatcctgccggacttcgacgcgatcgccgaccgcctcgacgacatccaggcgatc
gtcctcacgcacggccacgaggatcacatcggtgccgtcccgtacctgctgaagctcaag
ccggacatcccgctcgtcggctcgaccctcacgctggcgctcatcgaggcgaagctgaag
gagcaccggatcaagccctacaccctgggggtccgggagggcggtcgcgagaagttcggc
gtcttcgactgcgagttcatcgccgtcaaccactcgatccccgacgccctggcgctcttc
ctccgcacgcccggcggcaccctgctgcacaccggcgacttcaagatggaccaggtgccg
ctcgaccgacgcctgacggacctgcgtgccttcgcccgggcgggggaggagggggtcgac
ctcttcctcaccgactccaccaacgccgaggtcccgggcttcaccacgcccgagcgcgac
atctccagctcgatcgacgacgtcttccgcaaggcgcgtcgccgggtcatcgttgcctgc
ttctccagccacgtgcaccgcgtccagcaggtgctcgacgccgccgagcgctccggacgc
aaggtcgcgatggtcggccgttcgatggtgcgcaacatgggcatcgccgcggacctgggc
tacctgcacgtccccgacaacgtgctcgtggacgtcaagaagctcgaccaactgcccgac
gacgaggtcgttctcgtgtgcaccggtagtcagggtgagccgatggccgcgctgtcgcgc
atggccaaccgcgaccaccgtatcgacgtcggcgagggcgacaccgtcctgctcgcctcg
agcctgatccccggcaacgagaacgccgtctaccggatcatcaacggtctgatgcgtctg
ggcgcggacgtcgtgcacaagggcaacgcccgggtgcacgtctccggccacgccagcgcg
ggcgagctcctgtactgctacaacatcgtcaagccgcgcaacgtgatgccggtccacggc
gagtggcgtcacctcgtggccaacgccgagctggccatcgacaccggcgtcgaccccgag
cacgtggtcctcgccgaggacggcgtcgtcgtcgacctgatcgacggtcgcgcgcgcatc
gtcggggcggtgccctgcggttacacctacgtcgacggttcgagcgtcggcgccgcgacc
gaggagctgctcaaggaccgtcgcatcctgcgcgacgagggcttcatctcggtcatggtc
gtcgtcgactcctcgaccggcaagatcgtcgccggcccggagatcaccgcgcgcggcttc
gccgaggacgaggagatcttcacccaggtgcgacccaagatcatctccgcgatcgaggag
gccacccgcaagggcacgaccgacccgcaccagctgcagcaggtcgtgcgccgcgccgtc
ggcggctgggtcggcggcaagatccgtcgtcgtccgatgatcatcccggtggtcgtggag
gcctga

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