Janibacter alittae: V1351_14605
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Entry
V1351_14605 CDS
T10540
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
jai Janibacter alittae
Brite
KEGG Orthology (KO) [BR:
jai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jai03019
]
V1351_14605 (hrpB)
Enzymes [BR:
jai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
V1351_14605 (hrpB)
Messenger RNA biogenesis [BR:
jai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
V1351_14605 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_25
Cas3-like_C_2
EAD1
AAA_11
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WXB76155
LinkDB
All DBs
Position
3024445..3026955
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AA seq
836 aa
AA seq
DB search
MPSFDLAAIGQALPFAEALDDLGIAVTGRGVAVVQAPPGSGKTTLAPPLVADRVPGRVVV
TGPRRVAVRAAAHRLAHLTGTAVGELVGYTVRGDRRLRAGARIEFFTPGVLVRRLLSDPE
LSGTAAVVLDEIHERALDTDLLLGMLAEVRQLRDLPLVAMSATLDAPTVADALADGAGPA
PLVDSPGALHPLEVRWAPSPTPRTDARGVTRDFLHHVATTTAHHHGEGGDTLVFVPGARE
VERVIEGLNRLVPGAEVLPLHGRLGPREQDRATGVRRGDSSRIIVSTDLAESSLTVPGVR
LVVDAGLSREPRRDAARDMSGLVTVQASRASMIQRAGRAARLGPGTAVRLIEESAWVRAP
EHVTPQITTADLTEAALVLAAWGSPRGDGMPLLTPPPVAAITAAEETLHGLGLVDDEGRI
TDLGQAAVRVPADPRLARALLAGTHLVGTRAAAEVVAALADDLRSEDGDLTRLLAGLRAG
RGREAPRWRREVDRLTRLVPAVDGEPHSGAAGLIAALAHPSRIARRVGDGPTYLLASGTR
AALPAGNSLRHHEWIVAADVARAEGRVAAGTGAVIRLATGLTRQEAETAGAGLRVRQVRA
DLGDQRVTAREVDAIGAIELSSTPVRVDARTGAAAVARALTGRGLDVLVWSPAADTLRRR
LAALHHHLGDPWPDVSDEALGRRLAEWLGPELQRIAMGTPVATIDLTDPLRRLLPWPEAT
RLDELAPDRLAVPSGSRVSITWPEHDEPSAAPVVAVKLQECFGLAESPRLVDGRVPVLFH
LLSPARRPLAVTDDLASFWSGPYTQVRGEMRGRYPKHPWPQDPWSAPATSRTKRRM
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
gtgccctccttcgacctcgccgccatcggtcaggcactccccttcgccgaggccctcgac
gacctggggatcgccgtcacgggtcggggcgtcgcggtggtgcaggcgccgcccggcagc
ggcaagacgaccctcgccccgcccctcgtcgcggaccgtgtccccggtcgggtcgtggtc
accggtccccggcgcgtggccgtacgcgctgctgcacaccgtctcgcccacctgacgggt
acggcggtcggcgagctcgtcggctacacggtgcgcggcgaccggcggctgcgggcgggc
gcgcggatcgagttcttcacccccggcgtcctcgtgcgtcggctgctctccgatccggag
ctgtccgggaccgctgccgtcgtcctcgacgagatccacgagcgcgccctcgacaccgac
ctgctgctggggatgctcgccgaggtccgccagttgcgtgacctgccactggtggcgatg
tccgcgacgcttgatgcgccgaccgtcgcggatgccctggccgacggggccggacctgcg
ccgctcgtcgacagccccggtgcgctgcaccctctcgaggtccggtgggcgccctccccc
acgccgcgcaccgacgcccgcggtgtgacacgcgacttcctccaccacgtggcgacgacg
accgcgcaccaccacggcgaagggggcgacaccctcgtcttcgttcccggcgcccgggag
gtcgagcgggtcatcgaggggctgaaccggctcgtgcccggcgcggaggtgctgccgctg
cacggacgtctcggtccgcgggagcaggaccgggcgaccggcgtgcgacgcggcgactcg
tcacggatcatcgtctccaccgacctcgcggagtcctcgctcacggtccccggggtgcga
ctggtcgtcgacgcgggcctctcccgcgaaccacgccgcgatgcggcccgggacatgtcc
ggccttgtgacggtccaggcctcccgggcctcgatgatccagcgggccggccgggccgcc
cgcctcggtcccggcaccgcggtccgcctcatcgaggagtccgcgtgggtccgcgcgccg
gagcacgtcaccccgcagatcacgaccgcggacctcaccgaggcggcactggtgctcgcc
gcctggggctcgcctcggggtgacgggatgccgctgctgaccccgccccctgtcgccgcc
atcaccgctgccgaggaaaccctccacgggctcggactcgtcgacgacgagggccggatc
accgacctcgggcaggctgccgtccgggtgcccgcggacccccggctggccagggccctg
ctcgccggcacgcacctcgtcggcaccagggccgccgccgaggtcgtcgctgcgctggcc
gatgacctgcgcagcgaggacggggacctcacccggctcctcgcgggcctgcgcgccggt
cgcggtcgggaggccccccgctggcggcgcgaggtggaccggctgacccgactcgtcccc
gccgtggacggcgaaccacactccggcgcagcagggctcatcgccgccctggcccacccc
agccgcatcgcccgacgcgtcggtgacggaccgacctacctgctcgcgtccgggacgcgg
gccgccctgccggcgggcaactcccttcgccaccacgagtggatcgtcgccgcggacgtc
gctcgcgccgaggggcgggtcgccgccgggaccggtgccgtcatccggctggccaccggt
ctcacccggcaggaggcggagaccgccggagcgggactgcgcgtgcgtcaggtccgcgcc
gacctcggcgaccagagggtgaccgcccgtgaggtcgacgccatcggggccatcgagctg
agctccaccccggtccgggtggacgcccggaccggcgccgcggcagtcgcccgtgccctg
accggtcgcgggctcgacgtgctggtctggtcacccgccgcggacacacttcgacgccgc
ctcgccgcgctgcaccaccacctcggcgacccgtggccggacgtgtccgacgaggccctg
ggcagacggctggccgagtggctgggccccgagctgcagcggatcgccatggggacaccg
gtggccacgatcgacctgaccgacccccttcgccggctgctgccgtggcccgaggcgacg
cgactcgacgagctggcgccggaccggctcgcggtccccagcggctcacgcgtgtccatc
acctggccggagcacgacgagccctctgccgcaccggtggtcgcggtgaaactgcaggag
tgcttcggcctcgcggagtcgccgaggctggtcgacggtcgggtgcccgtactcttccac
ctgctctccccggcccggcgtccgctcgcggtcaccgacgacctcgcctccttctggtcc
gggccgtacacgcaggtgcgcggcgagatgcgagggcgctacccgaagcacccgtggccg
caggacccgtggtccgctcccgcgacgtcccggaccaagcgccgaatgtag
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