Janthinobacterium sp. 17J80-10: EKL02_08590
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Entry
EKL02_08590 CDS
T05896
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jaj
Janthinobacterium sp. 17J80-10
Pathway
jaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKL02_08590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jaj03019
]
EKL02_08590
03009 Ribosome biogenesis [BR:
jaj03009
]
EKL02_08590
Enzymes [BR:
jaj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EKL02_08590
Messenger RNA biogenesis [BR:
jaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EKL02_08590
Ribosome biogenesis [BR:
jaj03009
]
Prokaryotic type
rRNA processing factors
EKL02_08590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QAU34235
UniProt:
A0A410US90
LinkDB
All DBs
Position
complement(1890840..1893839)
Genome browser
AA seq
999 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARSYFKEGVDVRNASIKEALREGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPTGMSVIARTAGIGRNVEELQ
WDLNYLMQLWRAIEGAGTSSPGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYDQAH
QFMTHVMPDMMHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNLEAAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETR
LKDALHYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVILIPNKHLETPH
YKMERIKLDDPRLEDVQASYAMAEEADTDIGYSKRQKEDVKPRQEAMVKGITPAQPAPVV
ERKPAEAAAPAPQPAILSGEPGFLGKLFGFFFKKPEPVAAPAAPVESKPEQARERSNDRN
GRGGQRGRGRGGRGPREDREGARNEPRQEGAARQAGTDAAAPAARQPRPPREGQEGRRER
GERTDRAERGERTEAGERPERVERPERAERPERSERGERQQRGRQERKEAPVKAEEPVVE
AAALPLTAAVPAASEAIRVTSAEEPVEALAEGSAPETEAGEQSEEQRRRRRRRGGRNRNR
REREGGEGLDGEGAVEAGEAEGVAQAEAAVGVDASVSSAAAAEASAPAVEVAIPAPAVEQ
TAPASPPAELATPAAIAPVTSVAQQITLPLEAAAPEVVATPAVAAVPELAAAPEAIAAPA
AQASVAEVAAPVPVVPAAPAAPIAAKAAPAIRAAAPLRLDDLQSVLSAAGLTLASTDPDK
LRAAQEAAAKIVPPARVPRERKPLPPLSTEPLVQVETRL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttattcaacgccacgcagcaagaagaattgcgcgtggcaatcgtcgat
gggcaaaaactgatcgacatcgacatcgaaaccgctggccgcgaacagcgcaagtcgaat
atctacaagggtgtcattacccgtatcgaaccctcgctggaagcctgcttcgtgaactac
ggcgaagaccgccacggctttttgcccttcaaggaagtggcacgcagctacttcaaggaa
ggcgtggacgtccgcaatgcctccatcaaggaagccctgcgcgaaggccaggaaatcatg
gtgcaggtcgaaaaggaagaacgcggcaacaagggcgcagccctgacctcgttcatttcg
ctggccggccgctacctggtcctgatgccgaacaacccgcgcggcggcggcgtatcgcgt
cgcgttgaaggcgaagaccgccaggaactgcgcgaaaccatggacaagctcgacctgcct
acgggcatgtcggtgattgcccgcacagccggtatcggccgtaacgtcgaagagctgcag
tgggacttgaattacctgatgcaactgtggcgcgccatcgaaggcgccggcacatcgtcc
ccgggcgccttcctgatttaccaggaatcctccctggtgatccgcgcgatccgcgactat
ttccaacctgatatcggtgaaatcctgatcgacaccgacgagatctacgaccaggcgcat
cagttcatgacccacgtcatgccggacatgatgcaccgcgtcaagcgctatcgcgacgat
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcgtattcgcgtacc
gtgcccctgccttccggcggcgccatcgtgatcgaccataccgaagcgctggtgtcagtc
gacgtcaactcggcgcgcgccacccgtggcagcgatatcgagaccaccgccttcaatacc
aacctggaagcggccgaagaagtggcccgccagttgcgcctgcgcgacctgggtggcctg
atcgtgatcgacttcatcgacatggagaattccaagaaccagcgcgaagtcgagacgcgc
ctgaaggatgcgctgcactacgaccgtgcgcgcgtccagatgggcaagatttcccgcttc
ggactgatggaattgtcgcgccagcgcctgcgcccgtcgctgtccgaaggcagccacgtg
acttgcccgcgctgcaacggcaccggccatatccgcgataccgaatcctccgccctgcag
gtgctgcgcatcatccaggaagaggcaatgaaggaaaactcggccgccatccatgtgcag
gccccggtcgatgtggccgctttcctgctgaatgaaaagcgcggcgagatcctgaagatc
gagacccgccaccgcgtgaccgtgattttgatccccaacaagcatctggaaacgccgcat
tacaagatggaacggatcaagctcgacgatccgcgcctggaagacgtgcaagccagctat
gccatggccgaagaggccgataccgatatcggctacagcaagcgccagaaggaagatgtc
aagccgcgccaggaagccatggtcaagggcattacccctgcgcaaccggctcccgtcgtc
gaacgcaagcctgcagaggcagcggcgccagcaccgcagccggcgatcctgtcgggcgag
ccgggattcctgggcaagctgttcggtttcttctttaaaaagccggaaccagtggcagcg
cctgccgcgccggtggaatccaagccagaacaggcacgcgagcgcagcaacgaccgcaat
ggccgtggcggacagcgtggtcgcggtcgcggtggccgcggtccgcgtgaagatcgcgaa
ggcgcacgtaatgaaccgcgccaggaaggtgcagcccggcaagccgggactgacgcagcg
gcaccggcagcacgccagccacgccccccgcgcgaaggccaggaaggccgccgtgaacgc
ggcgagcgcactgatcgcgcggaacgcggtgagcgtaccgaagccggcgaacgtccggaa
cgcgtagagcgcccggagcgcgcagaacgtcccgagcgcagcgagcgtggcgaacgccag
caacgtggacgccaggaacgcaaggaagcgccggtcaaggctgaggagccggtcgtcgag
gcagcagcactgccgttgactgcagcggttccggcagcgtcggaagccattcgcgtaact
tctgcagaagaaccggtcgaggcattggcagagggcagcgcgcccgaaaccgaagcaggc
gagcaaagcgaagagcaacgccgccgccgccgtcgccgtggcggccgcaaccgcaaccgc
cgcgaacgcgaaggtggcgagggcctggacggtgaaggcgctgtcgaggcgggcgaagct
gaaggcgtggcgcaagccgaagctgccgttggcgttgatgcgtcggtttcaagtgcagcc
gctgccgaggcatctgctccggccgtcgaagttgccatccctgcgcctgcagtcgagcaa
actgcacctgcaagcccccctgcagaactggcaacaccggcagcaattgcgccagtaacc
agcgtggcgcagcaaatcaccctgccactggaagcagcggcacctgaagttgttgcgact
cctgccgttgcagcagtgccggagcttgcagcagcacctgaagccattgctgcgccagca
gcccaggcgagcgttgcagaggtggctgcgcctgtgccagtcgtaccggctgcaccggca
gcgccgatcgcagcgaaagccgcacctgcaatccgggctgcggcgccgctgcgcctcgac
gatttgcagtcggtcctgagtgctgccggcctgactttggccagcacggatccggacaag
ctgcgcgctgcccaggaagccgctgcgaagattgtcccgccggcacgcgtgccgcgcgag
cgcaagccgctgccgccgctgtcgaccgagccgctggtccaggtcgagacgcgtctgtaa
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