Janthinobacterium sp. 17J80-10: EKL02_16135
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Entry
EKL02_16135 CDS
T05896
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jaj
Janthinobacterium sp. 17J80-10
Pathway
jaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKL02_16135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jaj03019
]
EKL02_16135
Enzymes [BR:
jaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKL02_16135
Messenger RNA biogenesis [BR:
jaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EKL02_16135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
PRAI
AAA_22
MerR-DNA-bind
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QAU35569
LinkDB
All DBs
Position
complement(3626713..3628221)
Genome browser
AA seq
502 aa
AA seq
DB search
MSDNQSAAAQPTPASVRFEDFGLSPDILRALADQGYVHPTPIQAQAIPIVLQGRDVMGAA
QTGTGKTAGFSLPIIQLLLAHASNSASPARHPVRALILTPTRELADQVADNVKAYSRYTS
LRSTVVFGGMDMAPQTAALRSGVEIVIATPGRLLDHVQQKTLNLSQVQILVMDEADRMLD
MGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLANSFLDKPVTIEVARSNATAENVTQI
IYKVAEEAKRQAVAHIVRERGLKQVIVFSNTKIGASRVARELEKQGLKASAIHGDKSQSE
RMAALEAFKQGGIEILVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGALG
DAISLVTDKDARLLADIEKLIKKQLAPTELAGFVPHAEHGAERRPRRDEERGDRSERGGE
RRPRRDEERSGAPVRTAPPGRSAYAATPRREKIDPWFLKPYEPSQPVPANAVENKDQAGK
TASSAKPQKARVAALLGGTPKR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaaccagtccgccgccgcgcaaccaactccagcttccgtccgtttcgaggat
ttcggcctctcgcccgatatcctgcgcgcgctcgccgaccaggggtatgtccatccgacg
cccatccaggcgcaagccattccgatcgttttgcaagggcgtgacgtcatgggcgctgcc
cagaccggtaccggcaagactgccgggttttctctgccgatcatccagctgttgctggcg
catgccagcaacagcgcatcgcccgcgcgccatccggtgcgcgcgctgatcctgacgccc
acgcgcgagttggcagaccaggtcgccgacaacgtcaaggcatattcgcgctatacatcg
ttgcgctcgaccgtggtgttcggcggcatggatatggcgccccagaccgcggcattgcgc
tccggcgtggagatcgtcattgcaacgccaggccggctgctcgaccacgtgcagcaaaag
accctgaacctgtcgcaggtgcaaatcctggtgatggacgaagccgaccgcatgctcgac
atgggctttttgccagacctgcagcgcatcatcaacctcttgcccaagcagcggcaaaac
ctgatgttctcggcaacgttttcgcctgagatcaagaagctggccaacagcttcctcgac
aagccggtgacgatcgaggtcgcgcgcagcaatgccaccgccgagaatgtcacgcaaatc
atttacaaggtcgccgaagaagccaagcgccaggcagtcgcccacatcgtgcgcgagcgc
ggcttgaagcaggtgatcgtgttttcaaacaccaagatcggcgcatcccgcgtggcgcgc
gaactggaaaagcagggcctcaaggcgtcggcgatccatggcgacaaatcgcaatccgaa
cgcatggccgcgctggaagccttcaagcagggcggcattgaaatcctggttgccaccgat
gttgccgcacgcggacttgacattgccgagctgccttgcgtgatcaattacgacttgccc
tacaacgccgaggattacgtccaccgcatcggccgcaccggtcgtgccggcgctttgggt
gacgcgatctcgctggtgacggacaaggatgcccggttgctggccgatatcgaaaagctg
atcaagaagcagctggcgccgactgagctggcaggcttcgtgccccatgccgagcatggc
gccgaacgtcgtccgcggcgcgacgaggagcggggtgatcgcagcgaacgtggcggcgag
cgccgtccgcgccgtgacgaggaacgcagcggcgcgcctgtccgtactgcaccgccggga
cgcagcgcctatgcggcgacaccgcgccgggaaaagatcgacccgtggttcctgaaaccc
tacgagccctcgcagccggtgccggccaatgccgtggaaaacaaggaccaggcaggaaaa
actgcctcttccgccaagccgcaaaaagccagggtggcagcgctcctgggcggaaccccc
aagcgctga
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