Janthinobacterium sp. 17J80-10: EKL02_18040
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Entry
EKL02_18040 CDS
T05896
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jaj
Janthinobacterium sp. 17J80-10
Pathway
jaj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jaj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EKL02_18040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jaj03021
]
EKL02_18040 (rpoC)
03400 DNA repair and recombination proteins [BR:
jaj03400
]
EKL02_18040 (rpoC)
Enzymes [BR:
jaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EKL02_18040 (rpoC)
Transcription machinery [BR:
jaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EKL02_18040 (rpoC)
DNA repair and recombination proteins [BR:
jaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EKL02_18040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF6991
Motif
Other DBs
NCBI-ProteinID:
QAU35909
LinkDB
All DBs
Position
complement(4008659..4012897)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEHGDDFTAFM
GAEGIRELLRAIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEVQEPVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREKINGKGEGMMFPDVSEVIRAYENK
EVELTTRITVRITEYPKDAESGEFVKTIKRYETTVGRAILSEILPKGLPFTVLNKALKKK
EISKLINTSFRKCGLRATVVFADQLLQSGFRLATRAGISICVDDMLVPPQKHTLISQAEH
EVKQIEQQYASGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEPVTRRDGTQGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTTNGAAMKALVEGGEVIEPLRDRI
LGRVAATDVVNPETQETLFEAGTLLDEDGVEEIERLGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGFLVAAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGDQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGLVIKAGTALA
TWDPLTRPIITEYAGTVRFENVEEGVTVAKQIDEVTGLSTLVAIDAKRRGSSAAKTARPQ
VKLLNEKGEEVKIAGTEHPVTIGFQVGALITVKDGQQVSVGEVLARIPTESQKTRDITGG
LPRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGNKHEFLITKDKQVLV
HDGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVR
QMLRRVQIVDAADANYIPGEQVERSELLDENDRVIAAGGRPATYENVLLGITKASLSTDS
FISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPAGTGLAFHRARKEKETWEAE
ERTALLQAEQTARATEIEPTPAETFGTPEGDA
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagttcagcaaaatgaacagttcgacgccatc
aagattggcctggcgtcgcccgagaaaatccgttcgtggtcctacggcgaagtcaagaag
ccggaaaccatcaactaccgtacattcaagccggagcgtgacggcctgttctgcgccaag
atctttggcccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtcatctgcgaaaagtgcggcgtcgaagtcacgctggcgaaggttcgccgcgag
cgcatgggccacatcgagctggcctcgccgaccgcccacatctggttcctgaaatcgctg
ccgtcgcgtctgggcatggtcctcgacatgaccctgcgcgatatcgaacgcgtgctgtac
ttcgaagcctatgtcgtgaccgatcccggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtatgaagaacacggcgacgacttcaccgccttcatg
ggcgccgaaggtatccgcgaactgctgcgcgccatcgacatcgaccgcgaagcagaaacc
ctgcgccaggaattgaaagattccaagtccgaagccaagatcaagaaatacgccaagcgc
ctgaaagtgctggaagcgttccagcgttccggtatcaagccggactggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgcccgctggtaccgctggacggtggccgtttc
gccacctccgacctgaatgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cgcctgatggaattgcgcgcgccggaaatcattacccgcaacgaaaagcgcatgctgcag
gaagcggtcgactcgctgctggacaacggccgtcgcggcaaggccatgactggcgccaac
aagcgtccgctgaagtcgctggccgaaatgatcaagggcaagggcggccgtttccgtcaa
aacttgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgcaa
ctcaaactgcatcagtgcggcctgccgaaactgatggcgctcgagttgttcaagcccttc
attttcaacaagctcgaactcatgggcctggcgaccaccatcaaggccgccaagaagctg
gtcgaagtgcaggagccggtggtgtgggacatcctcgaagatgtcatccgcgaacacccg
gtcatgctgaaccgcgcgccgaccctgcatcgcctgggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggccatccagctgcatccgctggtttgcgccgcgttcaacgccgac
ttcgacggcgaccagatggccgtccacgtgccgctgtcgatcgaagcgcagatggaagcc
cgcacgctgatgctggcttcgaacaacatcctgttcccgtccaacggcgagccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtattacgccacccgtgagaagatcaacggc
aagggcgaaggcatgatgttcccggacgtctcggaagtcatccgcgcttacgagaacaag
gaagtcgaactgaccacccgtatcacggtgcgtatcaccgagtatccgaaggatgcggaa
agcggcgaattcgtcaagaccatcaagcgctacgagaccaccgtcggtcgcgccattctg
tcggaaatcctgccgaagggcctgccgttcaccgtgctgaacaaggccctgaagaagaag
gaaatctccaagctgatcaacacctcgttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgccgaccagttgctgcaatcgggcttccgtctggcaacccgagccggcatctcgatt
tgcgtggacgacatgctggtgccgccacaaaagcacaccctgatttcgcaggccgagcac
gaagtcaagcagatcgagcagcagtacgcttccggtctggtgacggcgggcgaacgctac
aacaaggtggtggatatctggggcaaggccggcgacgaagtcggcaaggccatgatggac
cagctgaaggtcgagccggtcacccgccgtgacggcacccagggcacccaggaatcgttc
aacgccatttacatgatggccgactccggtgcccgcggttccgccgcccagatccgccag
ctggccggtatgcgcggcctgatggccaagccggatggctcgatcatcgagacgccgatt
accgcgaacttccgcgaagggctgaacgttctgcagtacttcatctcgacccacggcgcc
cgtaagggtctggccgataccgcgctgaagacggcaaactccggctacctgacccgtcgt
ctggtcgacgtgacccaggatctggtggtcatcgaggatgattgcggcaccacgaacggc
gccgccatgaaggcgctggtcgagggcggtgaagtcatcgaaccactgcgcgaccgtatt
ctcggccgtgttgccgccaccgacgtggtcaatccggaaacccaggaaaccctgtttgaa
gccggcaccctgctggacgaagacggcgtcgaggaaatcgaacgcctgggcatcgacgaa
gtcaaggtccgtaccccgctgacctgcgacacgcgctatggcttgtgcgccaagtgctat
ggtcgcgatctcggccgcggcttcctggttgccgcaggtgaagctgtcggcgtggttgcc
gcgcagtcgatcggcgaaccgggtacccagctgaccatgcgtaccttccacatcggtggc
gcggcttcgcgtgcggcagtggcatcctcggtggaagccaagtccaacggcacggtgcgc
tttaccgccaccatgcgttacgtcaccaacggcaagggcgatcagatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccatggacgcgagcgcgagcgccacaaggtgcca
tatggcgccaccctgatcgtcaaggacggcctggtcatcaaggccggcaccgccctggcg
acctgggatccgctgacccgtccgatcattaccgaatacgccggcacggtgcgcttcgag
aatgtcgaggagggcgtcaccgtcgccaagcagatcgacgaggtcaccggcctgtcgact
ctggtggcgatcgatgccaagcgtcgcggcagcagtgctgccaagacggcccgtccgcag
gtcaagctgttgaacgagaagggcgaggaagtcaagattgccggcaccgagcatccggtg
accatcggcttccaggttggcgcgctgatcaccgtgaaagacggtcagcaagtcagcgtc
ggcgaagtgctggcgcgtatcccgaccgaatcgcaaaagacccgcgacattaccggcggt
ctgccgcgtgtggccgaactgttcgaggcgcgttcgccgaaggatgccggcatgctggcg
gaagtcaccggtaccgttgccttcggtaaggaaaccaagggcaagcagcgcctggaaatc
accgacatggaaggcaacaagcacgagttcctgattaccaaggacaagcaagtgctggtg
catgacggccaggtggtcaacaagggcgaaatgatcgtggacggcccggccgacccgcaa
gacatcctgcgcctgctgggtatcgaagcgctggcccgctacatcgtcgacgaagtgcag
gacgtgtatcgcttgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgc
cagatgttgcgtcgcgtgcagatcgttgatgctgctgacgccaactacatcccgggcgag
caagtcgagcgttcggagttgttggacgaaaacgaccgcgtgattgctgcaggcggccgt
ccggcaacgtacgaaaacgtgttgctgggtattaccaaggcttcgctgtcgaccgattcc
ttcatctcggccgcttccttccaggaaactacccgcgtgctgaccgaggctgccatcatg
ggcaagcgcgacggcttgcgtggcctgaaggaaaacgtcatcgtcggtcgcctgattccc
gccggtaccggccttgcgttccatcgtgcccgcaaggaaaaggaaacctgggaagcagaa
gaacgcacggcattgctgcaggccgagcagaccgcccgcgcaacggaaatcgagccgacc
ccggccgagacctttggcacgccggaaggcgacgcataa
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