Janthinobacterium sp. LM6: BZG29_02965
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Entry
BZG29_02965 CDS
T04756
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
jal
Janthinobacterium sp. LM6
Pathway
jal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BZG29_02965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jal03021
]
BZG29_02965
03400 DNA repair and recombination proteins [BR:
jal03400
]
BZG29_02965
Enzymes [BR:
jal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BZG29_02965
Transcription machinery [BR:
jal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BZG29_02965
DNA repair and recombination proteins [BR:
jal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BZG29_02965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DNAPolymera_Pol
Motif
Other DBs
NCBI-ProteinID:
AQR67432
LinkDB
All DBs
Position
669068..673174
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHHVPFLLATQLESYHSFLQEDIAPSGRKNDGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMSHEQILANFFVFDNFNLRSE
GAEMEFVSERLRGEVARFDIVDKSGKTLVLKDKRINAKHVRDIEAAGIKHISVPEDYLLG
RVLAKNIVDGDTGEVVASANDELTEDLLGRLRDANISEIQTLYTNDLDQGAYISQTLRID
DTADQMAAKVAIYRMMRPGEPPTEDSVEALFNGLFYNSDRYDLSAVGRMKFNRRIGRDEL
TGAMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
EGSKITDQIDYLSAIEEGRYIIAQANATINDEGMLSDELVSAREAGETILVSPERIQYMD
VAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSGT
TVQALRGGIVDYIDAGRVVIRVNDDEATAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVG
DRVAKRDVIADGASTDLGELALGQNMTVAFMPWNGLNFEDSILISENVVKDDRYTSIHIE
ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVQAGDTLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIVRDKRAQQIIDDELK
RFRLDLNDQMRIVEGDAFQRLEKMLIGKVVNGGPKKLAKGAKITKEYLADLDKYHWFDIR
PADDDAAVALEAIKESINEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKRRLQ
SGDKMAGRHGNKGVVSRIVPVEDMPYMADGTPADVVLNPLGVPSRMNVGQILETHLGWAA
KGLGIRIGEMLKAQTKVEQVRKYLTTIYNDNGRAEELNDFDDEEIMKLAENLKKGVPFAT
PVFDGANEEEIRRMLDLAYPDDIAKNLGMTASKNQVTMYDGRTGEAFERKVTVGVMHMLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaaacgcattcgcaaatcattcgcgaagcgcgccaac
gttcaccacgttccgttcctgctggcgacccagctcgagtcttatcatagtttcttgcaa
gaggacatagcaccgtccggccgcaagaatgatggcctgcagtcggctttcacttcgatt
ttccctatcgtttcgcacaatggttttgcgcgtctcgaattcttgtcgtacgttctgggc
gatcctgcctttgacgtcaaagaatgtcaacaacgtggcctgacgttcgcgtcgccgctg
cgcgcgaaagtgcgtctggtgatcctggacaaggaatcgccaaccaagcctgtcgtcaag
gaaatgaaagaacaggaagtctacatgggcgaattgccgctcatgacgaccaccggttcg
ttcgtcatcaacggcacggagcgggttatcgtttcccagctgcaccgttcgcctggcgtg
ttcttcgagcacgaccgcggcaagacccactcgtcgggcaagctgctgttctccgcgcgt
atcattccttaccgcggttcgtggctggacttcgagttcgacccgaaagacatcctgttc
ttccgcgtcgaccgccgccgcaagatgccagtgacgatcctgctcaaagccatcggcatg
tcgcatgagcaaatcctggcgaacttcttcgtcttcgataatttcaacctgcgctccgaa
ggcgcggaaatggaattcgtctccgaacgtctgcgcggcgaagtggcgcgtttcgacatc
gttgacaagtcgggcaagaccctggtgctgaaagacaagcgtatcaacgcgaaacatgtg
cgtgatatcgaagctgccggcatcaagcatatttccgtaccggaagactacctgctgggc
cgcgtattggcgaagaatatcgtcgatggcgataccggcgaagttgttgcttccgcgaac
gatgaattgacggaagacttgctgggtcgcttgcgcgacgccaacatttccgaaatccag
accttgtacacgaacgacctggatcagggcgcctacatctcgcaaaccctgcgtatcgac
gacaccgccgaccagatggctgcgaaagtggcgatctaccgcatgatgcgtccaggcgaa
ccgccaacggaagattccgttgaagcgctgttcaatggcctgttctacaactcggaccgc
tacgacctgtcggccgtgggccgcatgaagttcaaccgccgcattggccgcgatgaactg
acgggcgccatgaccctgtcgaacgaagacgtgctggccgtgatcaagatcctggtggaa
ctgcgcaatggccgcggcgaagtcgacgatatcgatcacctgggtaaccgtcgcgtacgt
tgcgtgggcgaactggccgagaatcaattccgcgccggcctggtgcgtgttgaacgcgcc
gtcaaggaacgcctcggccaagccgaagcggacaacctgatgccgcacgacctgatcaac
tcgaagccgatttcggccgcgattcgcgagttcttcggttcgtcccagctgtcgcagttc
atggaccaaaccaatcctctgtcggaaattacccacaagcgccgcgtatcggctctggga
cccggcggtctgacacgcgaacgcgccggctttgaagtgcgcgacgtgcatccgacccac
tacggccgcgtctgcccgatcgagacaccggaaggtccgaacattggtctgatcaactcg
ctggctctgtatgcccgcctgaatgaatacggcttcctggaaaccccgtaccgcaaggtc
gaaggttccaagattaccgatcaaatcgactacctgtccgccatcgaagaaggccgctac
atcatcgctcaggcgaatgcgaccatcaacgacgaaggcatgctgtccgatgaactggtc
tcggcccgtgaagctggcgaaaccatcctggtatccccggagcgcatccagtacatggac
gtggcgccaggccagatcgtttccgtcgctgcttcgctgattccgttcctcgaacacgat
gatgcgaaccgtgcattgatgggcgccaacatgcaacgccaggctgtgccttgcttgcgt
ccggaaaaagcgctggtcggtaccggtatcgaacgcaccgttgcggtcgactcgggcacc
accgtgcaagcgctgcgtggcggtatcgtcgattacatcgatgcgggccgtgtcgtgatt
cgtgtgaacgatgacgaagctaccgctggtgaagtgggcgtcgacatctacaacctgatc
aagtacacccgttcgaaccagaacaccaacatcaaccagcgtcctatcgtgcaagtgggt
gaccgtgttgccaagcgcgacgtgatcgccgacggcgcatcgaccgacctgggtgaattg
gcgctgggccagaacatgaccgtggccttcatgccatggaatggtctgaacttcgaagat
tcgatcctgatctcggaaaacgtcgtcaaggacgaccgctacacctcgattcacatcgaa
gagttgtcagtggtggcccgtgacacgaaactgggcgcggaagaaattacgcgcgacatc
tcgaacctggctgaaaaccagctggctcgtctggatgagtccggtatcgtctacatcggc
gcggaagtacaagctggcgacaccctggtcggtaaggtaacgccaaaaggcgaaacccag
ctgaccccggaagagaagctgctgcgcgcgatcttcggcgaaaaagcgtcggacgtgaaa
gacacctcgctgcgcgtgccttcgggcatgatcggtaccgtgattgatgtgcaagtcttc
acccgtgaaggcatcgtgcgcgacaagcgtgcccagcaaattatcgatgacgaactgaaa
cgtttccgtctggacttgaacgaccagatgcgtatcgtggaaggcgatgccttccagcgt
ctggaaaaaatgctgatcggcaaagttgtcaacggcggcccgaaaaagctggccaaaggc
gccaagatcaccaaggaatacctggccgatctggacaaataccactggttcgacatccgc
cctgcggacgacgatgcagcagtagcgctggaagcgatcaaggaatcgatcaacgagaag
cgtcaccagttcgatctggccttcgaagagaagcgcaagaaactgacgcaaggcgatgag
ctgcaaccaggcgtgcaaaaaatggtcaaggtgtacctggccgtgaaacgccgcctgcag
tcgggcgacaagatggcaggtcgccacggtaacaagggtgtggtttcccgtattgttcct
gtggaagatatgccatacatggccgacggcacgccagccgacgttgtgctgaacccgttg
ggcgtcccttcgcggatgaacgttggtcagattctcgagactcacttgggctgggctgcc
aagggtctgggtatccgcatcggcgaaatgctgaaggcgcaaaccaaggtcgagcaagtg
cgcaagtacctgacgacgatctacaacgacaacggccgtgccgaagagctgaacgacttc
gacgacgaagagatcatgaagctggcggaaaacctgaaaaaaggtgttccattcgccacg
ccagtgttcgacggcgccaatgaagaagagatccgccgcatgctggacctggcgtatccg
gacgacatcgccaagaacctgggcatgaccgcatcgaaaaaccaggtgaccatgtatgac
ggtcgcaccggtgaagcgttcgagcgcaaggttactgtcggcgtcatgcacatgctgaaa
ctgcatcacttggtcgatgacaagatgcatgcgcgttcgaccggtccttactcgctggta
acgcaacagccactgggcggtaaagcccagttcggtggtcagcgtttcggtgagatggaa
gtctgggcactggaagcgtatggcgcgtcgtatgtcttgcaagagatgttgaccgtcaag
tccgatgacgtgaatggccgtaccaaagtgtacgagaacctcgtcaagggcgaccacgtg
atcgacgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgttcgctcggt
atcgatatcgacctcgaacgcaactaa
DBGET
integrated database retrieval system
