Janthinobacterium sp. LM6: BZG29_03475
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Entry
BZG29_03475 CDS
T04756
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
jal
Janthinobacterium sp. LM6
Pathway
jal03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
jal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BZG29_03475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jal03400
]
BZG29_03475
Enzymes [BR:
jal01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BZG29_03475
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BZG29_03475
DNA repair and recombination proteins [BR:
jal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BZG29_03475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AQR67524
LinkDB
All DBs
Position
complement(789932..790768)
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AA seq
278 aa
AA seq
DB search
MPELPEVEVTRRGVAPHIEGRAVRAVVLRRDGLRWPFPHALGEQLSGQTIGLTGRRGKYL
LIHFRHGTLIIHLGMSGHLRVLPTGTEAQKHDHFDLVVEDADGSSQVLRMTDPRRFGAVL
WHDEADGPLDGHALLRGLGTEPLEGGFTGQLLFEKTRNKGTNIKQVLMAGDIVVGVGNIY
CSESLFRAGINPKTPARRIGLARYEKLAQSIRDVLAEAIVQGGSTLRDFIGVNGQSGYFQ
QTYFTYNRAGKPCRVCGAPIRQIVQGQRSTFYCVNCQK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccagaagtcgaagtcacacggcgcggtgtcgcgccccacatcgaaggg
cgcgccgtgcgtgccgtcgtgctgcgccgcgacggcctgcgctggcccttcccccatgcc
ctgggcgaacaattgtcggggcaaaccatcggcctgacgggacggcgcggcaaatacctg
ctgatccatttccgccacggcaccctgatcatccacctgggcatgtcgggccatttgcgc
gtgctgccgacgggaacggaggcgcaaaagcacgaccatttcgacctcgtcgtggaagac
gcggacggcagcagccaggtgctgcgcatgacggatccgcgccgcttcggcgccgtgctg
tggcatgacgaggccgacggcccgctggacggccacgcgctgctgcgcggcctgggcacg
gaaccgctggaaggcggcttcacgggccagctgctgttcgagaaaacgcgcaacaagggc
accaacatcaagcaggtgctgatggcgggcgacatcgtcgtcggcgtgggcaatatctat
tgttccgaaagcctgttccgcgcagggatcaacccgaagacgccagcccggcgcatcggc
ctggcccgctatgagaaactggcgcaatcgatccgcgacgtgctggccgaagccatcgtg
cagggcggcagcaccctgcgcgacttcatcggcgtcaatggccagtccggctacttccag
cagacgtacttcacgtacaaccgcgcgggcaagccatgccgcgtgtgcggcgcaccgatc
cgccagatcgtgcagggacagcgttccacgttttactgcgtgaattgccaaaagtag
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