KEGG   Janthinobacterium sp. LM6: BZG29_03535
Entry
BZG29_03535       CDS       T04756                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
jal  Janthinobacterium sp. LM6
Pathway
jal02020  Two-component system
Brite
KEGG Orthology (KO) [BR:jal00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BZG29_03535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jal03021]
    BZG29_03535
Transcription machinery [BR:jal03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BZG29_03535
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 PhyR_sigma-like Sigma70_ECF HTH_28 HTH_38 HTH_17 TnsD HTH_3 HTH_Tnp_4 HTH_11 PCI HTH_SB HTH_24 GerE HTH_40
Other DBs
NCBI-ProteinID: AQR71738
LinkDB
Position
801551..802069
AA seq 172 aa
MSTAELALQQQVSSLYTDHHHWLRGLLRRKLGNAFDAADLAHDVYLHLMKTGRMPPAGES
RRHLTQIANGLVIDLYRRRQIEAAYLEVLALVPEALAPSEEERALVIEALTEIDAVLHQL
PAKARKALLLCKLDGLSYRDIAAELQVSVSSVEKYIAAGLLACYQAMHAPDA
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgagcaccgccgagttagcgcttcagcagcaagtcagcagtctgtacaccgaccaccat
cactggctgcgtggcttgctgcgccgtaaactcggcaatgccttcgatgcggccgacctg
gcgcacgacgtgtacctgcacctgatgaagacggggcgcatgccgccggccggggagtcg
cgccgccacctgacgcagatcgccaacggcctggtcatcgacctgtaccgccgccgccag
atcgaggccgcctacctggaagtgctggctctggtgcccgaggctctggcgccgtccgag
gaagagcgcgctctggtgatcgaggcgctgacggaaatcgatgcggtgctgcaccagctg
cccgccaaggcgcgcaaggccttgttgctgtgcaaactcgacggcctcagctatcgcgat
atcgccgccgaattacaggtgtccgtctcgtccgtcgaaaaatacatcgccgccggtttg
ctggcctgctaccaggccatgcacgcgccggacgcctga

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