Janthinobacterium sp. LM6: BZG29_04165
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Entry
BZG29_04165 CDS
T04756
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jal
Janthinobacterium sp. LM6
Pathway
jal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZG29_04165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jal03019
]
BZG29_04165
03009 Ribosome biogenesis [BR:
jal03009
]
BZG29_04165
Enzymes [BR:
jal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BZG29_04165
Messenger RNA biogenesis [BR:
jal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BZG29_04165
Ribosome biogenesis [BR:
jal03009
]
Prokaryotic type
rRNA helicases
BZG29_04165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AQR67649
LinkDB
All DBs
Position
943050..945206
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AA seq
718 aa
AA seq
DB search
MSDTPISLFSDLNLSEPLIRALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAA
FALPILSRIDLKQSSPQALVLAPTRELAIQVAEAFQVYAAHIPGFHVLPIYGGQSYGPQL
SALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQETPE
GHQTALFSATMPSVIKRIATTYLVNPAEVTVAAKTGTADNIRQRYWLVSGMHKLDALTRI
LEAEAFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQAQRERTIQQLKDGKIDIL
VATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKNLLKA
IERSTRQPIGMLELPTIQAVNDVRIAKFKEQISETLALGELEQFQSLIEDFEREQNIPAI
EIAAALAKMARGNVPLLLDKNKAREQATWQDDRPARQDRFDRPERNDRFERNDRFDRNER
SERPAFPKKERIQRPADAGMQTFRIEVGHQHGVKPGNIVGAIANEAGIDSKNIGRIEIYD
DYSVLDLPDSMPKELLDQLKTVWVAGQQLRISRDGDAPDLAPPAAPRKPFAAKSAPAFKD
APADAGEVAPRAPKKERPRPGVTAYRIEVGREHAVTPSNIVGAIANEANLEAKHIGRIDI
FDNYSVLDLPEGMPPEILDHLKSVVVSGQKLRISLDDGTTERKPAPPRPKSPPRKTFK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacaccaatttccttattttccgaccttaacctgagcgagccgctgattcgc
gcgcttaaggatgtcggttacgaaacaccgtcgcctatccaggcggcgacgattccatta
ttgctcgcgaaccgcgacgtgctgggccaggcgcaaacaggcacgggtaagaccgccgcc
ttcgccttgccgatcctgtcgcgcatcgatctgaaacaaagctcaccccaagccctggtc
ctggcaccgacgcgcgaactggccatccaggtcgccgaagcattccaggtgtatgccgcc
cacattcccggcttccacgtgctgccgatctacggcggccaaagctatggcccgcaactg
tcggccctgcgccgcggcgtgcacgtcgtcgtcggcacccctggccgcgtcatcgatcac
ctggacaagggttcgctcgacctgtccaagctgaaaaccctggtgctcgacgaagccgat
gaaatgctgcgcatgggctttatcgacgacgtcgaacgcatcttgcaagaaacgccggaa
ggccatcaaacggctctgttctcggccaccatgccttccgtcatcaagcgcatcgccacc
acgtacctggtgaacccggccgaagtgacggtcgccgccaagacgggcacggccgacaac
atccgccagcgctactggctggtgtcgggcatgcacaagctcgacgcgctgacccgcatc
ctggaagcggaagcgtttgacggcatgatcatctttgcccgcaccaagctgggcacggaa
gagctggccggcaagctgcaagcgcgcggcttctcggctgccgccatcaatggcgacatc
cagcaagcccagcgcgagcgcacgatccagcagttgaaagacggcaagatcgacattttg
gtcgcaaccgacgtggccgcccgcggcctggacgtcgagcgcatcagccacgtcgtcaac
tacgacgtgccgcacgatccggaaagctacacccaccgcatcggccgcacgggccgcgcc
ggccgcagcggcgaagcgatcctgttcatcaccccgcgtgaaaagaacttgctcaaagcc
atcgaacgctcgacccgccagccgatcggcatgctggaactgccgaccatccaggccgtc
aacgacgtgcgtatcgccaagttcaaggaacagatcagcgaaaccctggccctgggcgaa
ctggaacagttccagtcgctgatcgaagatttcgaacgcgagcaaaacattcccgccatc
gaaatcgccgccgccctggcgaagatggcgcgtggcaatgtgcctttgttgctggacaaa
aacaaggcgcgcgagcaagccacgtggcaagacgaccgtcctgcgcgccaagaccgcttt
gaccgccctgaacgcaatgaccgtttcgaacgcaatgaccgcttcgaccgcaacgagcgc
agcgaacgcccggccttcccgaaaaaggaacgcatccagcgcccggccgacgccggcatg
cagactttccgtattgaggtaggtcatcaacatggcgtaaaaccgggcaatatcgtgggc
gccatcgccaacgaagcgggcatcgattcgaaaaacatcggccgcatcgaaatctatgac
gactacagcgtcctggacttgccagacagcatgccgaaagaattgctggaccagctgaaa
accgtgtgggtagcgggccagcagctgcgcatcagccgcgacggcgacgcaccggacctg
gcgccgccagccgcgccgcgcaagccgttcgccgccaagtccgcgccagcgttcaaggat
gcgccggcggacgcgggcgaagttgccccgcgcgcgccgaagaaggaacgtccacgcccg
ggagtgacggcctaccgcatcgaagtgggccgtgagcacgccgtaacgccaagcaacatc
gtcggcgccatcgccaacgaagcgaacctggaagccaagcatatcggccgcatcgatatc
tttgacaactacagcgtgctggacttgccggaaggcatgccgccggaaatcctcgaccac
ctgaaatcggtcgtcgtttcgggtcagaaactgcgcatcagcctggacgatggcacgacg
gagcgcaagcctgcgccgccgcgtccgaagtcgccgccgcgcaaaacgttcaagtaa
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