Janthinobacterium sp. LM6: BZG29_05870
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Entry
BZG29_05870 CDS
T04756
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
jal
Janthinobacterium sp. LM6
Brite
KEGG Orthology (KO) [BR:
jal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jal03016
]
BZG29_05870
Enzymes [BR:
jal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BZG29_05870
Transfer RNA biogenesis [BR:
jal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BZG29_05870
Prokaryotic type
tRNA splicing ligases
BZG29_05870
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AQR67937
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All DBs
Position
1307937..1309172
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AA seq
411 aa
AA seq
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MKNEEYEVLHTEGSRPVKMWTRGVPVEEAAKKQLRNTATLPFIYKHIAVMPDVHLGKGST
IGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLTANDLPDNLGPLRSAIERAIPHGMSPKTR
GHRGRDEGSWHTPPSVVDAAWLQLKDEFDAICLKTPKLKNTNNYRHLGTLGSGNHFVEVC
LDEQGSVWFMLHSGSRGVGNAIGTHFIELAKQDMRTHFINLPDQDLAYLAEGTQHYDDYV
EAVGWAQRFARNNREVMMQNLIAAVRTVIHKPFQTHVEAVNCHHNYVQKEHHFGKDVLIT
RKGAVSARAGELGIIPGSMGAKSFIVRGKGNADSFHSCSHGAGRTMSRTEAKRRFNLDDQ
IRATQGVECRKDENVIDEIPMAYKDIDAVMLAQRELVDVVHILKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaagaatacgaagtcctgcataccgaaggcagccgtcccgtgaaaatgtgg
acgcgtggcgtgcctgtcgaagaagcggctaaaaaacaactgcgcaacacggcgaccctg
ccgttcatttacaagcatatcgccgttatgcccgacgttcacctgggtaaagggtcgacc
atcggcagcgtgattcccaccctcggcgccgtgattccggccgccgtgggcgtggatatc
ggttgcggcatgatggcggcgaaaaccacgctgacggcgaatgatctgcccgataacctg
ggaccgctgcgcagcgccatcgagcgcgccattccgcacgggatgtcgccgaagacgcgc
ggccaccggggccgcgacgagggttcctggcatacgccgccctcggtggtcgacgccgcg
tggctgcaattgaaagatgaattcgacgccatctgcctgaaaacgccgaagctgaaaaac
acgaacaattatcgtcacctgggaaccctgggcagcggtaaccacttcgtcgaagtgtgc
ctcgatgaacagggttccgtgtggttcatgctgcattccggttcgcgcggtgtgggcaat
gccatcggcacccatttcatcgaactggccaagcaggatatgcgcacccacttcatcaac
ctgcccgaccaggatttggcttacctggccgagggaacgcagcattacgacgattacgtg
gaagcggtgggctgggcccagcgtttcgcccgcaacaaccgcgaagtgatgatgcaaaac
ctgatcgccgccgtgcgcaccgtcatccacaagccgttccagacgcatgtggaggccgtc
aactgccaccataactatgtgcagaaggaacatcacttcggcaaggacgtgttgatcacg
cgcaagggcgctgtctcggcccgcgccggagaattgggcatcattcccggctccatgggc
gcgaagagctttatcgtgcgcggcaagggcaatgcagacagtttccatagctgcagccac
ggtgcgggacgtacgatgagccgcacggaagcgaagcggcgcttcaacctggatgaccag
atacgcgccacgcaaggcgtggaatgccgcaaggatgaaaacgtgatcgatgaaattccg
atggcctacaaggatatcgatgcggtgatgctggcgcagcgcgagctggtcgatgtcgtg
catatcctgaagcaggtcgtctgcgtcaaaggttaa
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