Janthinobacterium sp. LM6: BZG29_09645
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Entry
BZG29_09645 CDS
T04756
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jal
Janthinobacterium sp. LM6
Pathway
jal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZG29_09645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jal03019
]
BZG29_09645
Enzymes [BR:
jal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BZG29_09645
Messenger RNA biogenesis [BR:
jal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BZG29_09645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQR68583
LinkDB
All DBs
Position
complement(2160368..2161738)
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AA seq
456 aa
AA seq
DB search
MSFSSLGLSDAIVRAVTEHGYTVPTPIQSQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVL
HRLSTDANGAAITSNTSTRPIRALILAPTRELAAQVEESVRAYSKYTKLNSAVIFGGVGI
NPQIKQLKHGVDILVATPGRLLDHMGQGTVDLSKVEILILDEADRMLDMGFIRDIKKVLA
VLPPKRQNLLFSATFSEEIKALADGLLNKPAMIEVARRNSTVEVIKQKIHPVDRDKKHPM
LSYLIKSNNWTQVLVFTRTKHGANKLVEQLGADGIGALAIHGNKSQSARTRALSEFKDGT
LQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGAKGEAVSLVCVDEHE
MLKDIEKLIKQTLPREVIPGFEPDLNARAQPVQLRSGTGGHRNNSRAPAGAVVRVKTGGS
GAKPRSAGPSGGGGGGNRSGNAPRSAASHRSGGRGR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttcctccctcggattgtccgacgctatcgtacgtgccgttaccgaacacggc
tacaccgtgccgaccccgatccagtcgcaggcgattcccgccgtgctggctggcggcgac
ttgctggccggcgcacaaaccggcaccggcaagacggccggcttcaccctgcccgtgctg
caccgcctgtcgaccgacgccaacggcgcggccatcaccagcaacacctcgacgcgcccg
atccgcgccctgatcctggcaccgacgcgcgaactcgccgcgcaggtcgaggaaagcgtg
cgcgcctacagcaagtacacgaaattgaactcggccgtgatcttcggcggcgtcggcatc
aacccgcaaatcaagcaactgaaacatggcgtcgacatcctcgtcgccacgccgggccgc
ttgctggaccacatgggccagggcaccgtcgacctgtcgaaagtggaaatcctgatcctg
gacgaagccgaccgcatgctggacatgggtttcatccgcgacatcaagaaagtgctggcc
gtgctgccgccaaaacgccagaacctgctgttctcggccacgttctcggaagagatcaag
gccctggccgacggcttgctgaacaagccggccatgatcgaagtggcgcgccgcaattcg
accgtggaagtgatcaagcaaaagatccatcccgtcgaccgcgacaagaagcacccgatg
ctgtcctacctgatcaagtcgaacaactggacgcaagtgctggtctttacgcgcaccaag
catggcgccaataaactggtggagcagctgggcgcggacggcatcggcgccctggccatc
cacggcaacaagagccagtcggcgcgcacgcgcgcgctgtccgagttcaaggatggcacc
ctgcaagtgctggtcgccaccgacatcgccgcgcgcggtatcgacatcgaccagttgccg
cacgtcgtcaactacgacttgccgaacattccggaagactatgtgcaccgtatcggccgc
acgggccgtgccggcgccaagggcgaagccgtgtcgctggtttgcgtggatgagcacgaa
atgttgaaagacatcgaaaagctgatcaagcaaaccctgccgcgtgaagtcattcccggc
ttcgagccggacctgaacgcccgcgcccagcctgtgcaattgcgcagcggcaccggcggc
caccgcaacaacagccgcgcgccagccggcgccgtcgtgcgcgtgaaaaccggcggcagc
ggcgccaagccacgcagcgccggcccgtcgggcggcggtggcggcggcaaccgttccggc
aatgcgccgcgttcggcggcttcccaccgctccggcggccgcggccgctaa
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