Janthinobacterium sp. LM6: BZG29_12520
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Entry
BZG29_12520 CDS
T04756
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
jal
Janthinobacterium sp. LM6
Pathway
jal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BZG29_12520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jal03400
]
BZG29_12520
Enzymes [BR:
jal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BZG29_12520
DNA repair and recombination proteins [BR:
jal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BZG29_12520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AQR69070
LinkDB
All DBs
Position
2800298..2803957
Genome browser
AA seq
1219 aa
AA seq
DB search
MTSHLLNPLAFPLHGSRLIEASAGTGKTWTIAALYVRLVLGHGDDDSRFTRPLLPADILV
MTFTRAATRELSNRVRERLIEAAAYFRHESGGSDPFLDALLESYPDESERQKAAHRLMLA
AETMDEAAIFTIDAWCQRMLREHAFDSGSLFDEELVSDEQALFEDAAHDYWRQQVYPLPP
QALDVLLACWPDVGALKKGARELARRADIMGMADEEPLSALIAREQRALAAQLAALKAGW
VERVDRMAAWINDHRAANPKCFNGVKMKPENLAKWFDGLRRWAQDPLLLLPAITAKAWER
LTPFGIEDAFAKSFTAQVPECFEHTEALGTALAALTPLAHKLHLHAAAAIARRMDQLKRQ
SRQFGFADMLQRLHDALAGENGAALRQRIIDQYPLAMVDEFQDTAPAQYQIFNLLYRIAD
NDPALGLFLIGDPKQSIYGFRGADIQSYLAARRATTGRHYQLGTNYRSTAPLVAAVNQLF
LHAERAEVPAGAFRYRKGDENPLPFEAVDAKGRDEWLVNAGGPLPALLAACASDEGLRGD
SYREYFAQHCAEHIVAMLGDAQAGFDGPDGFTRLQPADVAILVRDRKEAAAIRRALARRR
VASVYLSDKDSVVDSEEAQDVLRWLAALANPLDGGLARAAFATRTIGLSLGELARLSSDE
LEWERRVEQLKALHLIWQRQGVLAMLRRFIHELQLPAMLLQQTGGERRLTNLLHLAELLQ
SASRQLDGEQALIRWLAEQIAGEGEGGDERVLRLESDAELVKVITVHKSKGLEYPLVYLP
FAVTARKVDKRNRSFFEYAGEDGERRLDLSLSDEAMAAVEEARIEEDLRLLYVALTRARH
FLWLGVAAQAARKAGENTLHESALGYLLTGGDKLPAEQLLLRWQQVAGSCDAIYATSLAQ
PDACTVLDRVERRPELRPAPVFAGEFERDWSVGSFTSLTRQIGAVAAAHVPQRALEETLL
EDGTGVPAASPLQTGDAPWHRFPRGSVPGNFLHEQLEWMGSEGFDSVHDTNFDTRLAARC
ERAGWGHRQEDAIAWLREIAVTPLPLLDASLSQLDSTLSEMEFWFPSEHLSTGALDQLCT
RLLLDGAPRPLLPRRQLHGMLKGFADLVIEREGRYWVLDYKSNALGANDAAYHTAALAAG
MAQHRYDIQGAIYMLALHRLLKSRLGDAYDPAEHLGGAIFLFLRGIANADTHGCYWLAPQ
LELLDGLDQLLEETEHHAA
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgacgagccatctgctcaaccccctggcgtttccgctgcacggctcgcgcttgatcgaa
gcctcggccggcacgggcaagacctggaccatcgccgcactgtacgtgcggctcgtgctg
gggcatggcgacgacgacagccgttttacgcggccgctgctgccggccgacatcctcgtg
atgacgtttacccgcgccgccacgcgcgaactgtcgaaccgcgtgcgcgaacgcctgatc
gaggcggccgcttattttcgccacgaatccggcggcagcgacccgtttctcgacgccttg
ctcgagtcctatccggacgaaagcgaacggcaaaaggccgcgcaccggctgatgctggcc
gccgagacgatggatgaagcggccatcttcaccatcgacgcctggtgccagcgcatgctg
cgcgagcacgcgttcgacagcggcagcctgttcgacgaagaactggtcagcgacgagcag
gccttgttcgaggatgctgcccacgattactggcgccagcaagtctatcccttgccgccg
caggcgctcgacgtgctgctggcctgctggcccgacgtgggcgcgctgaagaagggcgcg
cgcgagctggcgcgccgcgcggacatcatgggcatggccgacgaagaaccgttatctgcc
ctgatcgcgcgcgaacagcgggcgctggccgcgcagctggccgccctgaaggcgggctgg
gtcgagcgcgtcgaccggatggccgcctggatcaacgaccaccgcgccgccaatcccaag
tgttttaacggcgtcaagatgaagccggagaacctggcaaagtggttcgacggcttgcgc
cgctgggcgcaggatccgctgttgctgctgccggccattacggccaaggcgtgggagcgt
ttgacgccgttcggcatcgaggatgcgtttgccaagagtttcacggcgcaggtgcccgag
tgcttcgaacatacggaagcgctggggacggccctggcggccctcacgccgctggcgcac
aagctgcatctgcacgcggcggcggccatcgcgcggcgcatggatcagttgaagcgccag
tcgcgccagttcggctttgccgacatgctgcaacggctgcacgacgcgctggccggcgag
aatggcgcggccctgcgccagcgcatcatcgaccagtatccgctggccatggtcgatgaa
ttccaggatacggcgccggcccagtaccagattttcaacctgctgtaccgcatcgccgac
aacgacccggcgctgggcctgtttttgatcggcgacccgaaacagtcgatctacggcttt
cgcggcgccgatatccagagctacctggcggcgcggcgcgccaccacgggccgccattac
cagctgggcaccaattaccgctcgacggcccccctggtggcggccgtcaaccagctgttc
ctgcacgccgagcgcgccgaggtgcctgccggtgccttccgctaccgcaaaggggatgaa
aatccgctgccgttcgaggccgtcgacgccaagggccgcgacgaatggctggtgaacgcc
ggcggcccgctgccggccctgctggccgcctgcgccagcgatgaagggctgcgcggcgac
agctaccgcgagtatttcgcgcagcactgcgccgagcacatcgtcgccatgctgggcgat
gcgcaagccggtttcgacggtcccgacggttttacgcgcctgcagccggccgacgtcgcc
atcctcgtgcgcgaccgcaaggaggctgccgccatccgccgcgcgctggcgcgccgccgg
gtcgccagcgtctacctgtccgacaaggattccgtcgtcgacagcgaggaagcgcaagac
gtgctgcgctggctggcggcgctggccaacccgctcgacgggggcctggcgcgcgccgcg
tttgccacgcgcaccatcggcctgtcgctgggcgagctggcgcgcctgtcgagcgatgaa
ctggagtgggaacgccgggtcgagcagctgaaggccctgcacctgatctggcagcgccag
ggcgtgctggccatgctgcgccgcttcatccacgaactgcaattgcccgccatgctgctg
cagcagacgggcggcgagcggcgcctgacgaatctgctgcacctggccgaactgctgcaa
tcggccagccgccagctcgatggcgagcaggcgctgatacgctggctggccgagcagatt
gccggcgaaggcgagggcggcgacgagcgcgtgctgcgcctggaaagcgatgcggagctg
gtcaaggtcatcaccgtgcacaaatccaaggggctcgaatacccgctcgtgtatctgccg
ttcgccgtcacggcgcgcaaggtggataaacgcaaccgcagcttcttcgagtatgcgggc
gaggatggcgagcgccgcctcgacttgtcgctgtccgacgaagccatggcggcggttgaa
gaggcgcgcatcgaggaagacctgcgcctgctgtacgtggccctgacgcgcgcgcgccac
tttttgtggctgggcgtggccgcccaggcggcgcgcaaggcgggcgagaacaccctgcac
gaatcggcgctcggctacctgctgacgggcggcgacaagctgccggcggaacaattgctg
ttgcgctggcagcaggtggcgggcagctgcgacgccatctacgcgacttccctggcgcag
cccgacgcctgcacggtgctggaccgggtcgagcggcgtcccgagttgcgtcccgccccc
gtgttcgcgggcgaattcgagcgcgactggtcggtgggcagctttacgtcgctgacgcgc
cagatcggcgccgtggcagccgcgcacgtgccgcagcgggcgctggaagaaaccctgctg
gaagatggcacgggcgtgcccgccgcctcgccgctgcagacgggcgacgcgccatggcac
cgcttcccgcgcggttccgtgcccggcaatttcctgcacgagcagctcgagtggatgggc
agcgaaggttttgacagcgtccacgataccaatttcgacacgcgcctggccgcgcgctgc
gaacgggcgggctggggccaccgccaggaagacgccatcgcctggctccgggaaatcgcc
gtcacgccgctgccgctgctcgatgcatcgctgtcgcaactggacagcaccctgtccgag
atggagttctggttccccagcgagcatttgtccactggggcgctcgaccagctgtgcacg
cgcttgctgctcgacggcgcgccgcgtcccttgctgccgcggcgccagctgcacggcatg
ctgaaaggctttgcagacctggtcatcgaaagggaggggcgctactgggtgctcgactac
aagtcgaatgcgctgggcgccaacgacgcggcctatcacacggccgcgctggcggccggc
atggcgcagcaccgctacgatatccagggcgccatctacatgctggccctgcatcggctg
ctgaaaagccggctcggcgacgcctacgatccggccgaacacctgggcggcgccattttc
ctgttcctgcgcggcatcgcgaacgcggacacgcatggctgctactggctggcgccgcag
ctggaactgctggacggcctcgatcaactgttagaagaaacggaacaccatgcagcatga
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