Janthinobacterium sp. LM6: BZG29_24180
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Entry
BZG29_24180 CDS
T04756
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
jal
Janthinobacterium sp. LM6
Pathway
jal03030
DNA replication
jal03430
Mismatch repair
jal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BZG29_24180
03430 Mismatch repair
BZG29_24180
03440 Homologous recombination
BZG29_24180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jal03032
]
BZG29_24180
03400 DNA repair and recombination proteins [BR:
jal03400
]
BZG29_24180
Enzymes [BR:
jal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BZG29_24180
DNA replication proteins [BR:
jal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BZG29_24180
DNA repair and recombination proteins [BR:
jal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BZG29_24180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AQR71069
LinkDB
All DBs
Position
complement(5510553..5514092)
Genome browser
AA seq
1179 aa
AA seq
DB search
MQEAGAPAGSQQAMQPGPAFVHLRVHSEYSIVDGLVRIDDVVKAAAKDKQVALAVTDLSN
LFGMVKFYKEARGKGIKPIVGVDVWITNDDNREKPSRLLLLAKNRMGYLQLCELLSTAWL
TNQYKGRAELRIEWLQALATNTYELYPGESAANGLIVLSGAHFGDVGIAIENGNLALAER
NAQRWAEIFPGHFYIEIQRGGQANQEAQVRHAVALAAKLGLPVVATHPVQFISPEEFIAH
EARTCIAEGEMLANAKRVKRFNDSQRFLSQADMAELFADLPAALANSVEIAKRCNLTLTL
GKPQLPNFPTPDGMTIDQFLVAESQAGLEKRLLQLYPDPEKREKERPRYESRLKFETDTI
CNMKFPGYFLIVAEFIQWAKENGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFL
NPERVSMPDFDIDFCQEGRDRVIQHVKDLYGKEAVSQIATFGTMAAKGAIRDVGRVMDFG
YNFCDGISKLIPFKPGKPVSIADAIEEEPLLKERLENEEEVKQLLDLAQQVEGITRNIGM
HAGGVLIAPGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVR
YIKQLDPAQANFDLATLPLNDKPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDII
ALVALYRPGPMDLIPDFCKRKHGERFDYPDPRTESILSETYGIMVYQEQVMQMAQIVGGY
SLGGADMLRRAMGKKKAEEMAEHREIFRAGAAKDGLTAEKADEIFDLMEKFAGYGFNKSH
AAAYALLSYHTAYLKAHHTAAFMAANLSLAMDDTDKIKILVEDALEICKLTLLPPDINES
DYRFMPSGAAPSVSGKKVTQIRYGLGAVKGSGQNAIEAIIAAREAGGPFTSLFDFCKRVD
KKQINRRTIESLIRSGAFDCLKVDRAILLASVAFAMECADQAAKAANQVSLFGGDDSDMV
APPEYVKVPVWTDKQRLTEEKIALGFYLSGHLFDSYAPEARRFARTKLSELSPSREPRMM
AGVITGLRTQMTQRGKILIVTLDDKSGTVEVTVYGELFDSNRKIFKEDEFLAVVGKVSED
RFSGGLRITAESAFDIISARVQYGRQLGLTLPTTLDMKRISDVIMPHRAADGLPIAAKVS
PQGVSCVLQFGDEWKVAPSDELQMALEQMLGAQEVAVEY
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaggccggcgctccggcaggttcacagcaagcgatgcagcccggccctgccttc
gtccatttgcgcgtgcactcggagtactcgatcgtcgatggcctggtgcgcatcgacgac
gtggtcaaggcggcggcgaaggacaagcaggtggcgctggccgtcaccgacctgtcgaac
ctgtttggcatggtgaagttctacaaggaagcgcgcggcaagggcatcaagcccatcgtc
ggcgtcgacgtgtggatcacgaatgatgacaaccgcgaaaagccgtcgcggctgctgctg
ctggcgaagaaccgcatgggctatctgcaactgtgcgaactgctgtccacggcctggctg
acgaaccagtacaagggccgcgccgagctgcgcatcgaatggctgcaggcgctggcgacg
aatacctatgagctgtacccgggcgaaagcgcggcgaatggcttgatcgtcctgtccggc
gcgcacttcggcgacgtcggtattgccatcgagaatggcaacctggccctggccgagcgc
aatgcgcagcgctgggccgagattttccccggtcatttctatattgaaatccagcgcggc
ggccaggccaaccaggaagcgcaggtacgccatgcggtggcgctggccgccaagctgggt
ttgcccgtggtggccacgcatcccgtgcaatttatttctccagaggaatttattgcccac
gaagcccgcacctgtatcgccgaaggcgaaatgctggccaacgccaagcgggtcaagcgc
ttcaatgacagccagcgcttcctgtcgcaggccgacatggcggagctgttcgccgacttg
ccggccgcgctggccaattccgtggaaatcgccaagcgctgcaatttgaccttgaccctg
ggcaagcctcaattgccgaatttccccacgcccgacggcatgacgatcgaccagttcctc
gtcgccgaatcgcaggcgggcctggaaaaacggctattacagctgtatcccgatccggaa
aagcgcgaaaaggaacgtccgcgctacgagtcgcgcctgaaattcgagaccgacacgatc
tgcaacatgaagttccccggctacttcctgatcgtggccgagtttatccagtgggccaag
gaaaacggcgtgcccgtcggcccgggccgcggttcgggcgccggttcgctggtggcgtat
tcgctgctgattaccgatcttgatccattgcaatacaacctgctgttcgagcgcttcctg
aatcccgaacgcgtctcgatgcccgacttcgatattgacttttgtcaggaagggcgcgac
cgcgtcatccagcacgtcaaggatttgtatggcaaggaagctgtctcgcagatcgccacc
ttcggtaccatggcggccaagggcgcgatccgcgacgtgggccgcgtgatggatttcggc
tataacttctgcgacggcatctcgaagctgattccgttcaagcccggtaaacccgtgtcg
atcgccgacgccatcgaggaagaaccgctgctcaaggagcgcctggaaaacgaggaagag
gtcaagcaactgctggacctggcgcagcaagtcgaaggcatcacgcgcaatatcggcatg
cacgcggggggcgtcctgatcgccccaggcaagctgacggatttctgcccgctgtacacg
cagggcggcgactcgggcgtcgtgtcgcagtacgacaaggacgacgtggaagccgtcggc
ctcgtgaagttcgactttttgggtctgacgaccctcaccatcctcgaccgcgccgtgcgc
tacatcaagcagcttgatcccgcgcaagctaattttgatctggcaacattgccgctgaac
gacaagccgtcctacgacttgctgaccaaggccaagaccgtggccgtgttccagctggag
tcgcgcggcatgcagggcatgctgaaagatgcgcgtcccgaccgtttcgaagacattatc
gcgctggtggcgttgtaccgtccgggcccgatggacctgattcccgacttctgcaagcgc
aagcacggcgaacgcttcgattatcccgatccgcgcacggaatcgattctgtccgaaacc
tacggcatcatggtgtatcaggagcaggtgatgcagatggcgcagatcgtcggcggctac
tcgctgggcggcgccgacatgctgcgccgcgccatgggtaaaaagaaggccgaagaaatg
gccgagcaccgcgagattttccgcgccggtgcggcgaaggatggcttgacggcggaaaag
gccgacgagatcttcgatttgatggaaaagttcgccggctacggtttcaacaaatcgcac
gccgccgcctacgccctgctgtcgtatcacacggcttacctgaaagcgcaccacacggcc
gccttcatggccgccaacttgtcgctggccatggacgacacggacaagatcaagattctg
gtggaagatgcgctggaaatctgcaagctgaccttgttgccgccggatatcaacgaatcc
gattaccgcttcatgccgagcggcgcggcgccgtccgtgagcggcaagaaagtcacgcag
atccgttacggcctgggcgccgtgaagggctcgggccagaatgccatcgaagccatcatc
gccgcgcgcgaggccggtggacctttcacgagcctgttcgatttctgcaaacgtgttgat
aaaaagcaaatcaaccgccgcaccatcgagtccctgatccgcagcggcgccttcgattgc
ctgaaggtcgaccgtgccatcctgctcgcgtccgtggccttcgccatggaatgcgccgat
caggcggccaaggcggcgaaccaggtaagcctgttcggcggcgacgacagcgacatggtg
gcgccacccgagtacgtcaaggtgcccgtgtggacggataaacagcgcctgacggaagaa
aagatcgcactgggcttctacttgtccggccatctgttcgattcgtatgcacccgaggca
cgccgttttgcccgcacgaaactgtcggaactgtcgccgtcgcgcgaaccgcgcatgatg
gcgggcgtcatcacgggcttgcgcacgcagatgacgcagcgcggcaagatcctcatcgtc
acgcttgacgacaagagcggcacggtggaagtgacggtgtacggcgaattgttcgattcc
aaccggaaaatcttcaaggaagatgaattcctcgccgtcgtgggcaaggtgtcggaagac
cgcttttcgggtggcttgcgcatcacggccgagagcgccttcgacatcatctctgcacgc
gtgcagtatgggcgccagctgggcttgactctgcccacgacgctggacatgaagcgcatc
agcgacgtgatcatgccgcaccgggctgcggacggactgccgatcgccgccaaggtcagc
ccgcaaggcgtcagttgcgtgctgcagttcggggacgaatggaaagtggcgccatcggat
gaattgcagatggcgctggagcaaatgctgggcgcgcaagaagtggcggtcgaatactga
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