Janthinobacterium sp. LM6: BZG29_24270
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Entry
BZG29_24270 CDS
T04756
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jal
Janthinobacterium sp. LM6
Pathway
jal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZG29_24270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jal03019
]
BZG29_24270
Enzymes [BR:
jal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BZG29_24270
Messenger RNA biogenesis [BR:
jal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BZG29_24270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_19
Cas3-like_C_2
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AQR71087
LinkDB
All DBs
Position
complement(5534067..5535617)
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AA seq
516 aa
AA seq
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MSETESTPTPSPAIAPEAAPAAATPAPAPAASAAPSLTFADFGLAPEIQRALTDQGYTHP
TPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLMAHASSSMSPARHPVRALILT
PTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQTVILRGGVEIVIATPGRLLDHIEQ
KNISLSQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFL
NDPLTIEVARSNQTADKVTQVVYKVTEDQKHALVAHLLRQRDLKQVIVFSNTKIGASRLA
RVLEQEGMSATAIHGDKSQQERMAALEAFKKGEIDVLVATDVAARGLDISDLPCVINFDL
PYNAEDYVHRIGRTGRAGASGDAISIYSDKDERLLADIEKLIKQSIKRGELTGFNPAPAR
SSDSERRPPRRSEGSEARPARAPESRHGGESRDSRSAERGARPAFGPGARREKADPWFLK
PYEPAKAAAPAAASMAPAAAKPKQKVAALLGGLLKN
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccgaatcgactcctacgcccagcccggcgattgcccctgaagcggcgccc
gccgccgctacgcctgcaccagcacctgccgcatccgctgctcccagcctgacttttgcc
gactttggcctcgcgcctgaaatccagcgcgcactgaccgaccagggttacacccatccg
acaccgatccaggaacaagcgatccccgtggtgctgcaaggccgcgatgtgatgggtgcc
gcgcagacgggcaccggcaagacggcaggcttttccttgccgatcatccagttgctgatg
gcgcatgccagcagcagcatgtcgccggcgcgccacccggtgcgcgcgctgatcctgacg
ccgacgcgtgaactggcggtgcaggtggccgaaaacgtcaaggcctacgccaagcatacg
ccgctgcgctcgaccgtcgtcttcggcggcatggacatgaagccgcaaaccgtcatcctg
cgcggcggcgtggaaatcgtcatcgccacgccgggccgcttgctcgaccatatcgagcaa
aagaacatcagcctgagccaggtgcagatgctggtcatggatgaagccgaccgcatgctg
gacatgggcttcttgccggacttgcaacgcatcatcaacttgctgccgaagcagcgccag
aacctgatgttctcggccacgttctcgccagaaatcaagaagctggctgccacgttcctc
aacgatccgctgacgatcgaagtggcgcgcagcaaccagacggccgacaaggtcacgcag
gtggtctacaaggtgacggaagaccagaagcatgccttggtcgcccatttgctgcgccag
cgcgacctgaagcaggtcatcgtattctcgaacaccaaaatcggcgcctcgcgcctggcc
cgcgtgctggaacaggaaggcatgagcgccacggcgattcatggcgacaagagccagcag
gaacgcatggcggcgctggaagcgttcaagaagggcgaaatcgacgtgctggtggccacc
gacgtggcggcgcgcggcctggatatttccgacttgccttgcgtcatcaacttcgacttg
ccgtacaacgcggaagattatgtgcaccgtatcggccgcacgggccgtgccggcgcctcg
ggcgacgccatttcgatctactcggataaggacgagcgcttgctggccgatatcgagaaa
ctcatcaagcaaagcatcaagcgcggtgaattgacgggcttcaatccggctcctgcccgc
agcagcgacagcgagcgccgtccgccgcgccgcagcgaaggcagcgaggcgcgtcctgcg
cgcgcacccgagagccgccatggcggcgagagtcgcgacagccgctccgccgagcgcggc
gcgcgtcccgcctttggtcccggcgcccgccgcgaaaaggccgatccctggttcctgaaa
ccgtatgagcccgccaaggcagcagccccggctgccgccagcatggcgcctgccgcggcc
aagccgaagcagaaggtggctgcgttgctgggtgggttgttgaagaactga
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