Jannaschia sp. CCS1: Jann_0040
Help
Entry
Jann_0040 CDS
T00330
Name
(GenBank) NusA antitermination factor
KO
K02600
transcription termination/antitermination protein NusA
Organism
jan
Jannaschia sp. CCS1
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jan03021
]
Jann_0040
03009 Ribosome biogenesis [BR:
jan03009
]
Jann_0040
Transcription machinery [BR:
jan03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Jann_0040
Ribosome biogenesis [BR:
jan03009
]
Prokaryotic type
rRNA transcription factors
Jann_0040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_5
NusA_N
HHH_5
KH_2
KH_1
KH_NusA_C
DUF4358
S1
Motif
Other DBs
NCBI-ProteinID:
ABD52957
UniProt:
Q28WF5
LinkDB
All DBs
Position
complement(38314..40086)
Genome browser
AA seq
590 aa
AA seq
DB search
MAITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSELDIRVSIDRKTG
RATFTRVRTVADEDTLENDKAEMLLADADATVAAERPNVVVFNAKSHVYDEEGEVVETRD
VRRFVMRKPTENDKLLTEGVDQSTGPVIGDMIADEVPPVEMGRIAAQSAKQVILQKVREA
ERDRQFAEFKDRVGEIINGVVKREEYGNVIVDVGSGEAQLRRNEKIGREAYRNGDRIRCY
IKDVRRENRGHQIFLSRTAPEFMRELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYD
NGIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVVLDEDA
GKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDILTEEEESKRRQAEFEERTKLFMDT
LDLDEFFAQLLVSEGFTALEEVAYVEADELLVIDGVDEGTAEELQARARDYLEAQNKLAL
EKAKEMGVEESLIAFEGLTPQMLVALGEDGVKTLEDFATCADWELAGGWTTEGGERIKDD
GLLEPFEVSLEEAQNMVMTARLQLGWVTIEELEADAAAEAEAAAQEGAEG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggccatcacgtcagccaaccagctggagcttttgcaaaccgcagaagccgttgcccgc
gaaaagatgatcgaccccaatctggtggtcgaggcgatggaagaaagtctcgcccgggct
gcaaagtcccgctatgggtccgagctggatatccgcgtttccatcgaccgcaagacgggc
cgcgccacgttcacccgtgtgcgcaccgtggcggatgaagacacgctggaaaacgacaag
gccgaaatgctgctggccgatgccgacgcaacggttgccgccgagcgccccaatgtcgtg
gtcttcaacgccaagtcccacgtctatgatgaggaaggcgaggttgtggagacccgcgac
gtgcgccgttttgtcatgcgcaagccgaccgagaatgacaagctcctgaccgagggcgtg
gatcaatccaccggccccgtgatcggtgacatgatcgccgacgaagtgccgcccgtggaa
atgggccggatcgccgcgcaatcggccaagcaggtcattttgcagaaggtccgcgaagcc
gagcgtgaccgtcagttcgccgagttcaaggaccgtgtgggcgagatcatcaacggcgtc
gtcaagcgtgaggaatacggcaacgtcatcgtcgacgtaggctccggtgaggcgcagctg
cgccgcaacgagaagatcgggcgggaagcctatcgcaacggcgaccgcattcgctgctac
atcaaggatgtgcgccgtgagaaccgcggccatcagatcttcctgtcgcgcaccgcgccg
gagttcatgcgcgagttgttcaagatggaagtgcccgagatctatgacggcatcatcgag
atcaaggccgtcgcccgcgatcccgggtcgcgtgccaagattgcggtgatttcctatgac
aatggcatcgaccccgtgggcgcctgtgtgggtatgcgcggcagccgggtgcaggctgtc
gtcaacgaattgcagggcgaaaagatcgacatcattccgtggaatgaggatgcgccgacg
ttcctggtgaatgcgctgcaacctgccgaggtctccaaggtggttctggatgaggacgcc
gggaagatcgaagtcgtggtgcccgatgagcagctgagccttgccattggtcggcgcggt
cagaacgtgcgtcttgcctcacagctgaccaaccttgatatcgatatcctgaccgaggaa
gaggaatccaagcgtcgtcaggccgagtttgaagagcgcacgaagctgttcatggatacg
ctcgacctggatgagttcttcgcgcagcttctggtctccgaaggcttcacggcgttggaa
gaagtggcctatgtggaagcggacgagcttctggtcatcgacggcgttgatgagggtact
gcggaagaattgcaggcccgcgcccgcgattatttggaggcgcagaataaactggcgctt
gagaaggcgaaagagatgggcgttgaagagagcctcattgcatttgagggccttactccc
caaatgttggtggccttgggcgaagacggcgtgaaaacgctggaagacttcgctacctgc
gcagattgggaactggccggcggttggacaaccgaaggcggagagcgcatcaaggacgac
ggccttttggagcccttcgaagtctctttggaagaagcacagaacatggtgatgaccgca
cgcctgcaactgggttgggtgacgatcgaggaattggaagccgacgccgctgccgaagca
gaagccgccgcacaggagggggcagagggctaa
DBGET
integrated database retrieval system
