Jannaschia sp. CCS1: Jann_0115
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Entry
Jann_0115 CDS
T00330
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jan
Jannaschia sp. CCS1
Pathway
jan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Jann_0115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jan03019
]
Jann_0115
Enzymes [BR:
jan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Jann_0115
Messenger RNA biogenesis [BR:
jan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Jann_0115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ABD53032
LinkDB
All DBs
Position
105076..106431
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AA seq
451 aa
AA seq
DB search
MWRIFGLRNGAGAKGYELFDFDMLGLKPILAKTLKTAGFSEPTPIQNQAIPLALDGHDIM
GLAQTGTGKTLAFGLPLLEHLLSLHGKPEPKTARALILAPTRELVNQIADSLRVFTQNTP
VKIATVVGGQSIGRQISTLSRGTDILVATPGRLMDLMDRRAIDLSTVKHLVLDEADQMLD
LGFIHALRKIAPALGTPRQTMLFSATMPKQMEELASAYLSNPKKVQVSPPGKAADKVTQV
VHFMPKPAKPAKLREVLNEDPDALVLVFGRTKHGCEKLMKGLVADGYNAASIHGNKSQGQ
RDRAIKAFRDGTIKILVATDVAARGIDIPGVAYVINYELPDTPDNYVHRIGRTARAGREG
EAIAFCSAEEVDLLVQIEKVMKMSIPVASGTRPEAVKAEKPQRGGRRRGGGGGGRPGGGG
GGNRKPQGKGGGGGGNGQPRKPRRPRRSKAA
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgcatattcggcttgcgcaatggcgcaggcgcgaaaggatacgaattgttcgat
ttcgacatgctcggcctgaagccgatccttgcaaagaccctcaagactgccgggttctct
gaacccaccccgatccagaaccaggcgatcccgctggccctcgacggccacgatatcatg
ggcctcgcccaaaccggcaccggaaagacgctggcgtttggcctgccgctgttggagcat
ctgctgtccctgcatggcaagccggagccgaagacggcgcgcgccctgatcctcgctccg
acccgtgagctggtgaaccagatcgccgacagcctgcgtgtgttcacccagaacacgccc
gtgaagatcgccaccgttgtgggcgggcaaagcattggccgccagatctccaccctgtcg
cgcggcaccgatatccttgtggcgacgcccggtcgcctgatggacctgatggaccgtcgc
gcgattgatctttccaccgtgaagcaccttgtgttggacgaggccgaccagatgctggat
ctcggcttcatccacgcgttgcgcaagattgcgcccgccttgggcacgccgcgtcagacc
atgctgttctcggccaccatgccgaagcagatggaagaactggcctccgcctacctctcc
aatcccaagaaagtgcaggtctcccctcccggaaaggcggcggacaaggtcacgcaggtg
gtgcatttcatgccgaagcccgcaaaacctgccaaactgcgggaggtcctgaatgaggac
cccgatgcgctggtcctcgtctttggccgcaccaagcatggctgcgagaaactgatgaaa
ggccttgtggccgacggctacaacgccgcttcgatccacggcaacaagtctcagggtcag
cgcgaccgcgcgatcaaggcgttccgggacggcacgatcaagatcctggtcgcgaccgac
gtggccgcccgtggcatcgacatccccggcgtcgcgtatgtcatcaactatgaactgccc
gacacgcccgacaattacgtgcaccgcattggccggacggcgcgggccggtcgtgagggc
gaagcgattgcgttttgctccgccgaagaagtcgatctgctcgtccagatcgagaaggtc
atgaagatgtccatccccgtggcctccggcacgcggcccgaggcggtgaaggccgaaaag
ccccagcgcggcggacggcgtcgtggcggcggcggtggcgggcgtcccggtggcgggggc
ggcggcaaccgtaagccccagggcaaaggcggtggtggcggtggcaacggccagccgcga
aaaccccgtcggcctcgccggtccaaagcggcctaa
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