Jannaschia sp. CCS1: Jann_0278
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Entry
Jann_0278 CDS
T00330
Name
(GenBank) putative DNA topoisomerase I protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
jan
Jannaschia sp. CCS1
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jan03032
]
Jann_0278
03400 DNA repair and recombination proteins [BR:
jan03400
]
Jann_0278
Enzymes [BR:
jan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Jann_0278
DNA replication proteins [BR:
jan03032
]
Prokaryotic type
DNA Topoisomerases
Jann_0278
DNA repair and recombination proteins [BR:
jan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Jann_0278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
Motif
Other DBs
NCBI-ProteinID:
ABD53195
UniProt:
Q28VR7
LinkDB
All DBs
Position
complement(284199..285170)
Genome browser
AA seq
323 aa
AA seq
DB search
MLPDGLIYYPDSQPGISRRRCGRGFSYRAPDGTTIADTDMRRRIDALAVPPAYNHVWISP
RLNGHLQATGYDAATRKQYRYHPDWTRFRANRKFEDLPRFGHALPRLRAAIRTGLEAEPG
SRDFVLAAVLGLIDRLSLRPGHPDYAEANGSFGATTLRSRHLLADEDGTRLRFLAKGGQK
VSKTLRDKTLARALHKLDDLPGAPIATWLEGDEVRTVSPDMLASFMADVTGEDGLTPKTF
RTWNGSVAAMDVALSNDDLTISAMADAAAKRLNNTPTMARNSYIHPEVIALSETEPDVRK
ILADATTPTRLRRSERALLNLIG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgctccccgacggtttgatctactatcccgatagccagcccggcatttcccggcgtcgc
tgcggacgtgggttcagctatcgcgcgcccgacggcaccaccatcgcagataccgatatg
cggcgccggatcgacgcattggccgtgccgccagcctataaccatgtctggatcagcccg
cgtctgaatgggcatctgcaagccacgggatatgatgccgcgacgcgcaagcaataccgc
taccaccccgactggacccgcttccgcgccaatcgcaagttcgaggatctgccacggttc
ggtcatgcgctgccccgcctgcgcgcggcaatccgaactgggctggaggcagaaccgggc
agccgtgacttcgtgctggccgccgttctgggcctgatcgaccgtctctcgctccgcccc
ggtcatccggactatgcggaggccaacggcagtttcggggcaacaacgctccgctcccgc
caccttctggccgacgaggacgggacgcggctgcggtttctggccaagggtggccaaaag
gtcagcaagaccctgcgcgacaagacgttggcccgggcccttcacaaacttgatgatctc
cccggcgcgcccatcgcgacctggctggagggtgatgaggtgcgcaccgtctcgcctgat
atgctggcgtccttcatggcagatgtaaccggagaagatgggctgacaccaaaaaccttc
cgcacatggaatggatcggtcgctgcgatggatgtggccctgagcaatgacgatctgacg
atctccgccatggccgatgcggcggcaaaacggcttaacaacacgccgacgatggcccgc
aacagctacatccacccggaggtgatcgcgttgagcgagacggagccggatgtccgcaag
atccttgccgacgcgacaacccccacacggttgcgcaggtcagagcgcgccctgctaaac
ctgatcggctga
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