Jannaschia sp. CCS1: Jann_0443
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Entry
Jann_0443 CDS
T00330
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jan
Jannaschia sp. CCS1
Pathway
jan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Jann_0443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jan03019
]
Jann_0443
03400 DNA repair and recombination proteins [BR:
jan03400
]
Jann_0443
Enzymes [BR:
jan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Jann_0443
Messenger RNA biogenesis [BR:
jan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Jann_0443
DNA repair and recombination proteins [BR:
jan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Jann_0443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
RQC
DEAD
Helicase_C
RecQ_Zn_bind
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
ABD53360
UniProt:
Q28VA2
LinkDB
All DBs
Position
446342..448399
Genome browser
AA seq
685 aa
AA seq
DB search
MLVEHPDTSAILKSTFGFDAFRPGQAEIVEAVASGKDVLAIMPTGGGKSLCFQLPALVRD
GVTVVISPLIALMRDQVRGLREAGVEAGALTSGNTPEETDAVWEGLERGTLKLLYLAPER
LASTGTERMLARAGVSMIAVDEAHCVSQWGHDFRPDYLRLGALRRALNVPLAAFTATADA
ETRAEICERLFEDPPEVFLHGFDRPNLTLAFEVKNQPRQQILSFAAARKGQSGIVYCGTR
AKTETLAKALRDEGHSACHYHGGMEADDRRIVETRFNREDGLIVCATVAFGMGVDKPDIR
WVAHADLPKSIEGYYQEIGRAGRDGAPADTLTLYGPDDIRFRRQQVDEGLAPPERKTADH
ARLNALLGLAEAQGCRRKVLLSYFGDEAEDCGNCDLCARPPELFDASVAVQKALSVMLRT
GEYFGAGHLIDVLLGAQNEKIRQRGHDRLSTYGIGTEFDKRGWQAVFRQMMGRDLVRPDP
ERHGAFRMTDAARPILRGEEGITLRKDTISKAPRRPAVKMLVSEEDAPLMSALKAKRRAL
AEDARVPAYVIFTDKTLIEMAEKRPDTLDDMARISGVGATKLERYGTAFLQVITGDTPEA
VHPARRALAGRDAGDVFDRLMEVQQDLMRGDDGTGKYLSVNHSTLRRIAERRPASLHDMA
RIAGMGDKQVDRFAEAFLEVLREAG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgttggtcgaacaccccgacacatctgcgattttgaaatccaccttcggatttgacgcc
ttccgccccggtcaggcggaaattgtggaggctgtggcgtccggcaaagacgtcttggcc
attatgccaaccggcggcggcaaaagcctttgtttccagctgcccgcactggttcgcgac
ggagttacggttgtgatttctccgctgattgcgctgatgcgcgatcaggtgcgcggtctg
cgggaagcgggggtggaggcgggcgctttgacctctggcaatacgcccgaggaaacggac
gcggtgtgggagggactggagcgcgggacgctgaagttgctctacctcgcgccggaacgg
cttgcctcaacggggacggaacggatgttggcacgcgcgggcgtatcgatgatcgccgtg
gatgaagcccattgtgtcagccagtggggccacgatttccgtcccgattatctgcgcctt
ggcgcgttgcgtcgtgcgctgaacgtcccgctggccgctttcaccgccacggcggacgca
gaaacgcgggccgagatttgcgaacgcctgttcgaggacccgccagaggtgttcctgcat
ggcttcgaccgcccaaacctgaccctcgcgtttgaggtcaagaaccagccgcgccagcag
atcctgtcgtttgccgccgcgcgcaaaggccagtccggcatcgtctattgcggcacacgg
gcgaagacggaaacgcttgccaaggctttgcgggacgagggccacagcgcctgccattac
catggtgggatggaggcggatgaccgacggattgtggagacccgctttaaccgcgaagac
ggcttgatcgtctgcgctacggtggcttttgggatgggggtcgacaagcccgatatccgt
tgggtcgcccatgccgatctgcccaagtcgatcgaggggtattatcaggaaatcggtcgt
gccggtcgcgacggcgcgcctgccgatacgctgacgctctacggtcccgatgatatccgc
ttccggcgccagcaggtggacgagggcctcgccccgccagaacgcaaaacagcagaccac
gcccgcctgaacgcgcttctgggtctggcggaagcgcagggatgtcgccgtaaagtgctg
ctgtcctacttcggggatgaggctgaggattgtggcaattgtgatctctgcgccaggccg
ccggaattatttgacgcctccgttgccgtgcaaaaggcgctgtccgtgatgctgcgcaca
ggtgaatatttcggcgcgggtcatttgatagatgtcctccttggcgcgcagaatgagaag
atcaggcagcggggtcatgatcgtctgtcgacctacggcatcgggacggagttcgacaaa
cgcggctggcaggccgtgttccggcagatgatgggacgcgaccttgtccgccccgatccg
gagcgtcacggcgcgtttcgcatgaccgacgctgcgcgccctattttgcgcggggaagaa
ggcatcacgctgcgcaaagatacgatctcaaaagcgccccgccgtcccgccgtgaagatg
ctggtgagcgaggaggacgcgccgctgatgtccgcactgaaagccaagcgccgcgccttg
gccgaggatgcgcgcgtgcccgcttacgtgattttcaccgacaagacgttgatcgaaatg
gccgagaaacgaccggacaccctggacgacatggcccgcatttccggtgttggggccacc
aagctggaacggtatggcacggcattcctgcaagtcataacgggtgacacgcctgaggcc
gttcaccccgcccgccgtgcactggccgggcgcgatgcaggcgatgtcttcgacaggctg
atggaggtccagcaggacctgatgcgcggggacgacggcacgggcaagtatctctcggtc
aatcactcgacgcttcgcaggatcgccgagcgcaggcccgcctcgctgcacgatatggcg
cggatcgcgggtatgggcgacaagcaggtggaccgctttgcggaagcgtttctggaggtt
ctgcgcgaggctggataa
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