Jannaschia sp. CCS1: Jann_0940
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Entry
Jann_0940 CDS
T00330
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
jan
Jannaschia sp. CCS1
Pathway
jan03030
DNA replication
jan03430
Mismatch repair
jan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Jann_0940
03430 Mismatch repair
Jann_0940
03440 Homologous recombination
Jann_0940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jan03032
]
Jann_0940
03400 DNA repair and recombination proteins [BR:
jan03400
]
Jann_0940
Enzymes [BR:
jan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Jann_0940
DNA replication proteins [BR:
jan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Jann_0940
DNA repair and recombination proteins [BR:
jan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Jann_0940
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
BDI_0842
Motif
Other DBs
NCBI-ProteinID:
ABD53857
LinkDB
All DBs
Position
895863..899330
Genome browser
AA seq
1155 aa
AA seq
DB search
MKVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKKAGVQPIIGCQIDLEYEVIAPGE
KPRAPAAIVLLAQNRAGYENLMKLNSALYLRGDGTSPHVTLSELAEHAEGLICLSGGPDG
PVGRHLRAAQMPKAESLLKTLAAIYPDRLYVELQRHPGEGGLPEAEKLTERGHVELAYAL
GLPLVATNDVYFPKSEIYEAHDAMLCVAQGAYVDQSEPRRRLTPQHYFKSADEMAALFAD
LPEALENTIEIAQRCAFRAEMHDPILPKFADDEVAELRRMANEGLKERLRVIPHAASVED
YQARLDFELEIIEGMGFPGYFLIVADFIQWSKDQEIPVGPGRGSGAGSLVAYALTITDLD
PLRYSLLFERFLNPERISMPDFDIDFCMDRREEVIRYVQEKYGRDRVGQIITFGALLSKA
AVRDVGRVLQMPFGQVDRLSKMIPVEGVKPVSIAQAIKDEPRFIEEMRESEQDKRDGRVN
PTRRLMDYAEKIEGLLRNASTHAAGVVIGDRPLDELVPLYRDPRSDMPATQFNMKWVEPA
GLVKFDFLGLKTLTVVQNAIDLIHTSGRQLHEGPDGTTLYEPPEGTENQINLIPLDDKAS
YDLYASAKTVAVFQVESSGMMDALRRMKPDCIEDIIALVALYRPGPMENIPKFCEVKNGL
SERERLHPTVDHLLDETQGIIVYQEQVMQIAQEMAGYSLGGADMLRRAMGKKIQEAMDAE
RPKFLAGAKENGVDEAKALETWALLDKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFM
AAVMNCDIHLTDKLAVYKQEVDRMGIETLAPCVNRSAATFTVEDGKVLYALGALKNVGVE
AMKMIVEGRQTDQGVKPYATLFDLARRVDLKRVGKRSLEMLVRAGAFDELDRNRRHVLDS
LDGLTAYSAAVHDQASSNQVSLFGDAGDDLPEPRLSSAPDWLPNERLAAEHQAVGFYFSG
HPLDDYQPALKRRGVMTLAEVEARVQQGPFVAKMAGAVSVKQERKSQRGNRFAFVSLSDP
TGLYEITIFSDTLEASREFLETGSNVIIQAEATLEAEQLKLLGRSVQPVDGAIASEANGL
RVFIEDESGVASVESLLERTAGDAAKSSKGPIHLCLMAPDLPGEVEVILGDSFPVSPQIK
GALRSLEGVVMVEEV
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgaaaaaaatgcctggtatagtggccgacgcggggatgcctgccgtcgccgtg
actgacacgaacaatatgttctgcgcgctcgaattctcggagatggcgaagaaggccggg
gtgcagcccatcatcggctgccagattgatctggaatatgaagtgatagcccccggagag
aagccgcgcgcgccggcggcgattgttctgctggcccagaaccgcgccggatatgagaac
ctgatgaagctgaactccgcgctgtatttgcgcggcgacgggacgtcgccccatgtgact
ttgtcggaactggcggagcacgcagagggtctgatttgtctgtccggtggccccgatggc
ccagtcggccggcacctgcgtgcggcgcagatgccaaaggcggaatcgcttctgaaaacc
ctcgccgcgatctacccggaccgtctttacgtggaattacagcgccaccctggagagggc
gggttgccggaggctgaaaagctgaccgagcggggccatgtggaactggcctatgcgctt
ggcctgccgctggtggccaccaatgacgtctatttccccaaatctgagatttacgaggct
cacgatgcaatgctgtgcgtcgctcaaggggcctatgtggaccaatccgagccgcgccgc
cgcttgacgccgcagcattatttcaagtccgcggacgaaatggccgcgctgtttgcggat
ttgccggaggcgttggaaaacaccatcgagatcgcccaacgctgcgctttccgcgcggag
atgcacgaccccatcctgccgaaattcgccgatgatgaggtggcagagctacgccgaatg
gccaatgagggtctgaaggaacggttgcgagtgatcccccacgcggcctccgtcgaagat
tatcaggcgcggctggatttcgagttggagatcatcgaagggatgggctttcccggctac
ttcctgatcgtggccgacttcattcaatggtccaaggatcaggagatcccggtggggccg
gggcgcgggtcgggcgcgggcagtcttgtggcctatgcgctgacgatcacggaccttgat
ccgctgcgctacagcctcctgtttgagcggttcctgaaccccgaacggatctcaatgccg
gactttgatatcgacttttgcatggatcgccgggaagaggtgatccgctatgtgcaggaa
aagtatggccgcgaccgggtggggcagatcatcacgtttggtgccctcctgtcgaaggct
gccgtgcgcgatgtgggccgcgtgttgcagatgccgttcggtcaggtggaccgtctgtcg
aaaatgatccccgtggagggggtgaagcccgtcagcatcgcgcaggcgatcaaggatgag
ccgcgcttcatcgaggagatgcgcgagagcgagcaggacaaacgcgatggccgggtgaac
cccacgcgtcgcctgatggattatgccgagaagatcgagggtctgctacgcaacgcctcc
acccacgcagccggtgtggtgatcggagaccgcccgctggacgagctggtgcctttgtac
cgcgatccgcgatccgacatgcccgcgacgcagttcaacatgaagtgggtggaaccggcg
gggttggtgaagtttgacttcctcgggttgaagaccctgaccgtggtgcagaacgcgatc
gatttgatccacacgtctgggcgtcagctgcatgaaggccctgatgggacgacgctctac
gaaccgccggaggggacggaaaaccagatcaacctgatccctttggacgacaaggcgagc
tacgacctttacgccagcgccaagaccgtcgccgtgttccaggtggaatccagcggcatg
atggatgcgctgcgccgcatgaagcccgactgcatcgaagacatcatcgcgctggtggcg
ttgtatcgccccggcccgatggagaacattccgaagttctgcgaggtgaaaaacgggctg
agtgaacgcgaacgcctgcaccccaccgtggaccatctgctggatgagacgcagggcatc
atcgtctaccaggaacaggtgatgcaaatcgcgcaggagatggcgggctacagccttggc
ggcgccgacatgctgcgccgcgccatgggcaagaagattcaggaggcgatggacgccgag
cggcccaagttccttgcgggcgcaaaagagaatggcgtggatgaggccaaggcgcttgaa
acatgggcgctgctggacaagtttgccaactacggcttcaacaaatcccacgccgccgcc
tacgccgtcgtgtcctatcaaacggcgtggctgaaggcgaaccacccggtggaattcatg
gccgccgtgatgaactgtgacatccatctgaccgacaagttggccgtctacaagcaggag
gttgaccggatggggatcgagacgctcgccccttgcgtcaaccgctctgcggcgacgttt
acggtggaagacggcaaggtgctctatgccctcggcgcgttgaaaaacgtcggcgtggag
gcaatgaagatgatcgtggagggcaggcaaaccgatcagggtgtgaagccgtacgccacc
ctctttgatctcgcgcggcgtgtggatttgaagcgtgtcggcaagcggtcgttggagatg
ttggtgcgggcgggcgcgtttgacgagctggatcgcaaccgccgccatgttcttgacagc
cttgacgggctcaccgcctattccgccgcggtccacgatcaggcgagctccaatcaggtg
tctctgtttggggatgcgggcgatgatttgccggaaccgcgcctgtcgtcggcccccgat
tggctgcccaacgaacgcttggcggcggagcaccaggccgtggggttctacttctcgggc
cacccactggacgattaccaaccggccttgaaacggcgcggtgtgatgaccttggccgaa
gtggaggcgcgtgtgcagcaaggccccttcgtggcaaaaatggccggtgccgtcagcgtg
aagcaggaacgcaagagccagcggggcaaccgcttcgcgttcgtgtccctcagcgatccg
acggggctttacgagatcacgattttctcggacacgctggaggcctcgcgcgaatttctg
gagacgggcagcaacgtgatcattcaggccgaggcaacgttggaggcggagcagctgaaa
ttgctggggcgcagtgtgcagccggtcgacggtgcaatcgccagcgaggccaacggattg
cgcgtgttcatagaagacgaaagtggcgtggcttcggtggaaagccttctggagcgcacg
gctggcgacgcggcaaaatcctccaaggggccgatccacctctgcctcatggcgcccgat
ctgcccggagaggtggaggtgatcctgggtgacagcttcccggtctccccccagatcaag
ggcgcgttgcggtcactggagggcgtggtgatggtggaagaggtctaa
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