Jannaschia sp. CCS1: Jann_1574
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Entry
Jann_1574 CDS
T00330
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jan
Jannaschia sp. CCS1
Pathway
jan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Jann_1574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jan03019
]
Jann_1574
03009 Ribosome biogenesis [BR:
jan03009
]
Jann_1574
Enzymes [BR:
jan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Jann_1574
Messenger RNA biogenesis [BR:
jan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Jann_1574
Ribosome biogenesis [BR:
jan03009
]
Prokaryotic type
rRNA helicases
Jann_1574
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABD54491
LinkDB
All DBs
Position
complement(1552377..1554497)
Genome browser
AA seq
706 aa
AA seq
DB search
MKQALQTALDAQGYDTLTPVQQAVTDPDLTGKDLLVSAQTGSGKTLGFGLAIAPQLFGEA
EAFGAAGAPLALVIAPTRELAMQVKRELSWLFAQAGATLASTVGGMDMRDERRALARGAH
IVVATPGRLKDHIMRGSIDLSSLKAVVLDEADEMLDLGFREDLEFILDTSPADRQTLMFS
ATVPAAIARLAQNYQKDAVRVATTTGEKQHSDIEYRALTVSARDGENAIINVLRFYEAPN
AIVFCNTRATVNRMTTRLSNRGFSVVALSGELTQSERTNALQAMRDGRARVCVATDVAAR
GIDLPNLELVIHAELPTNQDTLLHRSGRTGRAGRKGVSALIVPPAARKKAQRLLGWAKLT
AVWAEAPSADEVTARDDARMMEDADWDAEVQDSNREAVDKLVDKYSAEQLASAFVRMYRE
KRSAPEELSDASAAPEPRKAFGPSVWFSLAGGQAVGAEPRRLLPMLCKMGNITRDDVGAI
RIHHEASFIELRESAVDGFLAAVGGKMEMEDGAALTRLEAAPNVERAPRPPRPPRGEKPP
RTNKSNDRRTRREAETAPEPAAARAPTPAPKPQSSKPIDWNDAPAPRARKPKKPAAGGKP
ARPRAPDSKPDLPQADPWKARKPRHKSKSAGDGFERPTRSGGKPGGKPGGNPATKPGARL
GAPTTGKPNSKKNKARRAAAAEASGGGAPKPRKPRAPKSKKSKGPS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaggcccttcaaaccgccctcgatgcccaggggtatgacaccctcaccccggtt
cagcaggccgtcaccgacccggatctgacgggcaaggacctgctggtgtcggcccagacg
ggctcgggcaagacgctggggtttggcctggcgattgcaccgcagctgtttggcgaggcc
gaggcctttggcgcggctggcgcgcccctggcgctggttattgcgccgacacgcgaattg
gcgatgcaggtgaaacgggaattgtcgtggctgttcgcgcaggcaggcgcgacactggcc
tccaccgttggcggcatggacatgcgcgatgagcggcgggcgctggcacgcggggcgcat
atcgttgtggccacgccgggccggttgaaggaccacatcatgcgcgggtcgattgacctg
tcttccctgaaagccgtggtgctggatgaggctgacgagatgctggatctggggttccgg
gaggatctggagttcatcctcgacacatcccccgccgaccgacagaccctgatgttctcg
gccactgtgcctgcagccatcgcgcggttggcgcagaactaccagaaagacgcggtgcgc
gtcgccacgaccacgggcgaaaagcagcattccgacattgaatatcgggcgctgaccgtg
tccgcgcgcgatggcgagaacgcgatcatcaacgtgctgcgcttctatgaggcccccaac
gccatcgtcttttgcaacacccgcgcgacggtgaaccgcatgaccacgcggctgtcgaac
cggggcttctccgtcgtggctttgtctggcgagttaacgcaatcagaacgcaccaacgcc
ttgcaggccatgcgcgacgggcgcgcgcgggtctgtgtggcgaccgatgtggccgcgcgc
ggcatcgacctgcccaatctggaactggtgatccacgcggaattgcccacgaaccaggac
acgctgctgcaccggtcgggccggacgggtcgcgcggggcgcaagggtgtgtccgcgttg
atcgtgccgcccgccgcgcggaagaaggcgcaacggttgctggggtgggcgaagctgacc
gccgtctgggccgaggccccgtccgccgatgaggtcacggcccgcgacgacgcgcgcatg
atggaggatgcggattgggacgccgaggtccaagactccaatcgtgaagctgtggataag
ttggtggataagtactccgccgagcaattggccagtgcgttcgtgcgcatgtaccgcgag
aagcgatctgccccggaagagctatccgatgcctctgccgcgcccgagccgcgcaaggcg
tttggacccagcgtgtggttctctctcgccggggggcaagccgtgggcgcagagccgcgc
cgcctgctgccgatgctgtgcaagatgggcaatatcacgcgcgacgatgtcggagcgatc
cgcatccatcacgaggcgtcgttcatcgagctgcgcgagagtgcggtggatgggttcctg
gccgccgtcggtggtaagatggagatggaagacggcgcggccctgacccgtctggaggct
gcgccaaatgttgagcgcgcaccccgtcccccacgccccccgcgcggggaaaagccacct
cggaccaataaatccaacgaccgcaggaccaggcgagaggcggagaccgcaccagagccc
gcagcagcacgcgcgccgacgcctgcgcccaaaccgcaatcgtccaaaccgattgactgg
aacgatgcccccgccccccgcgcgaggaagccgaaaaaaccggccgcaggcggcaagcct
gcccggccccgcgcgcctgacagcaagcccgacctgccccaagccgatccctggaaggcc
cgcaagccgcgccacaaatccaaatcggcgggcgatgggttcgagcgtcccacacggtcc
gggggcaaaccgggtggaaagccgggcgggaaccccgccaccaaacccggcgcacgactg
ggcgcaccgaccacgggaaagcccaacagcaagaaaaacaaggcccgccgggcggcggcg
gcagaagcctcggggggtggcgcaccaaagccccgcaagccacgcgcacccaaatcaaag
aaatccaaagggccatcctag
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