Jannaschia sp. CCS1: Jann_1723
Help
Entry
Jann_1723 CDS
T00330
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
jan
Jannaschia sp. CCS1
Pathway
jan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Jann_1723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jan03400
]
Jann_1723
DNA repair and recombination proteins [BR:
jan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Jann_1723
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Jann_1723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_25
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND3
AAA_23
AAA_21
Motif
Other DBs
NCBI-ProteinID:
ABD54640
UniProt:
Q28RM2
LinkDB
All DBs
Position
1711211..1714084
Genome browser
AA seq
957 aa
AA seq
DB search
MAELKNIEVRGAREHNLKDIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESL
SAYARQFLDMMEKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARAGT
PYSPATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFTELRKQGFQRV
KVDGQFYELDEPPTLDKKFRHDIDVVVDRIVVRDGAETRLADSFRTALDLADGIAVLETA
VKEGEDAERFTFSEKFACPQSGFTIPEIEPRLFSFNAPFGACPSCDGLGVELFFDEGLMV
PDKALSLEDGAIAPWRKGKSPYFVQTIEAIAKHYGFAAKTKWKDLSPDIQQVFLRGSGEE
EIKFRYDEGGRVYQVERTFEGVIPNMERRYRETDSAWIREEFERFQNNRPCGDCGGFRLR
PEALAVKIGPSDRLLHVGQVVQMSIAEALAWVDTVPDALSKQKNEVARAILKEIRERLGF
LNNVGLQYLTLSRNAGTLSGGEAQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLT
TLKNLRDQGNTVIVVEHDEEAIREADYVFDIGPGAGVHGGQVVGHGTPADLIANSKSITG
DYLAGRKEIAVPVKRRKGNKKKLQVVKATGNNLQNVTADFPLGQFVCVTGVSGGGKSTLT
IETLFKTASMKLNGARQTPAPCETIKGLEHLDKVIDIDQRAIGRTPRSNPATYTGAFTPI
RDWFAGLPESKARGYKPGRFSFNVKGGRCEACQGDGLIKIEMHFLPDVYVQCETCKGARY
NRETLEIKFKGKSIADVLDMTVEDAQDFFKAVPSIREKMDALVRVGLGYIKVGQQATTLS
GGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVDQGNSVLVIEHN
LDVVKTADHIIDIGPEGGDGGGQIVAKGTPEQVAKVPESHTGRYLAPMLDARKHAAE
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggccgagctgaagaacatcgaggtgcgcggtgcgcgcgagcataacctcaaggatatc
gacgtcgatatcccgcgcgatcagctggtggtgatcaccggtctgtcgggctccggcaag
tcgtcgctggcctttgacacgatctatgcggaggggcagcggcgttatgttgagtcgctg
tcggcctatgcgcggcaattccttgatatgatggagaaaccggacgtcgaccatatttcc
ggcctgtcgcccgcgatctcgattgaacagaagacgacgtcgaaaaacccccgctccacc
gtcggcaccgtgaccgagatttacgactacctccgcctgctgttcgcgcgcgcgggcacg
ccctacagccccgccaccggcctgccaattgaggcgcaacaggtccaggacatggtcgac
cgcgtcatggcgatggaggaggggacgcgcgcctatctgttggccccgatcatccgcgac
cgcaaaggtgaataccgcaaggaattcacggagttgcgcaagcagggcttccagcgcgtg
aaggtggacgggcagttttatgagctggacgagccgcccacgctggacaagaaattccgc
cacgacattgacgtggtggtggaccggatcgtggtccgcgacggggcggagacgcggctg
gcggacagtttccgcacggcgctggacctggccgacgggatcgcggtgctggaaacggct
gtgaaagagggcgaggacgctgagcgcttcaccttcagcgaaaaatttgcctgtccgcag
agcggcttcaccatccccgagattgagccgcgattgttctccttcaacgccccgttcggc
gcgtgtccgtcctgcgacgggctgggtgtggagctgtttttcgacgaaggtctgatggtg
cccgacaaggcgctgagcctcgaagacggcgcgattgccccgtggcgcaaggggaaatct
ccgtatttcgttcagacgatcgaggcgattgccaagcactacggctttgcggccaagacc
aagtggaaggacctgtcgcccgatattcagcaggtgtttctgcgcgggtcgggtgaggag
gagatcaagttccgctacgacgaaggcgggcgcgtttaccaagtggaacgcacgttcgag
ggtgtgatccccaatatggagcgtcggtatcgcgagaccgatagcgcctggattcgcgag
gaatttgagcggttccagaacaaccgcccctgcggcgattgcggcgggtttcgcctgcgg
cccgaggcgttggccgtgaagattggtccatcggacaggctcctccatgtggggcaggtc
gtgcagatgtcgattgcggaggcgttggcctgggtcgacacggtccccgacgcgctgagc
aaacagaagaatgaggtcgcccgcgcgatcctgaaggaaattcgcgagcggctggggttc
ctgaacaatgtgggcctgcaatacctgaccctgtcgcgcaacgcgggcacgctgtccggt
ggcgaggcgcagcggatccggctggcatcccagatcgggtccggcctcacgggcgtgctc
tatgtgctcgatgagccgtccatcggcctgcaccagcgcgacaatgaccggctgttgacg
acgctgaaaaacctgcgcgatcagggcaatacggtgatcgtggtggaacatgatgaggaa
gcgatccgggaggcggactacgtcttcgatatcggtccaggggcgggcgtccatggcggg
caggtggtggggcacggcacgcccgccgatctgatcgcgaattccaaatccatcaccggc
gattatctggcaggccgtaaggaaatcgccgtgccggtcaagcggcgcaagggcaacaag
aagaagctgcaggtggtgaaggccacgggcaacaacctgcaaaacgtgaccgcagatttc
ccgctggggcagtttgtctgcgtcaccggcgtgtccggcggcggtaaatcgaccctgacg
attgagaccttgttcaaaacggcgtcgatgaagctgaacggcgcgcggcagacgcctgcg
ccgtgtgagacgatcaaggggctggagcatctggacaaggtgatcgacatcgaccagcgc
gccatcgggcggacgccgcggtcgaaccccgccacctataccggggccttcacaccgatc
cgcgactggtttgcgggcctgccggaatcgaaagcgcgcgggtacaagccggggcggttt
tcgttcaacgtcaaaggtggccggtgcgaggcctgtcagggcgacggcctgatcaagatc
gagatgcacttcctgcccgacgtctacgtccaatgcgagacctgcaaaggcgcgcgctac
aaccgcgaaacgctggagatcaaattcaagggcaaatccattgccgacgtgttggatatg
acggtggaggacgcgcaggattttttcaaggcggtgccgagcatccgcgaaaagatggat
gctctggtgcgggtgggtctgggctacatcaaggtcggtcagcaggccacgacgctgtcg
ggcggagaggcgcagcgggtgaaactatcgaaggagctggctaaacgctcaaccgggcgc
acgctctatattctggatgaaccgaccacgggtctgcattttgaggacgtgcgcaagctg
ttggaagtgctgcatgaattggtggatcaggggaattctgttctggtgattgaacacaac
ctcgatgtggtgaagaccgccgaccatatcatcgatatcgggccggagggcggcgatggc
ggcgggcagatcgtggccaagggcacgcccgaacaggtggcaaaggtgcccgagagccat
accgggcgctacctcgccccgatgctggatgcgcgaaagcacgcggcggaatag
DBGET
integrated database retrieval system
