Jannaschia sp. CCS1: Jann_4066
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Entry
Jann_4066 CDS
T00330
Name
(GenBank) UvrD/REP helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
jan
Jannaschia sp. CCS1
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jan03400
]
Jann_4066
Enzymes [BR:
jan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Jann_4066
DNA repair and recombination proteins [BR:
jan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Jann_4066
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DUF7532
Motif
Other DBs
NCBI-ProteinID:
ABD56983
UniProt:
Q28JX9
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All DBs
Position
4172687..4176049
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AA seq
1120 aa
AA seq
DB search
MDDATRAQTRAADPATSTWLGANAGSGKTRVLTDRVARLLLDGVPPERILCLTYTKAAAM
EMQNRLFSRLGTWAMKDDAALRDTLGAIGVGGLTPELLDTARTLFARAIEAPGGLKIQTI
HSFCASVLRRFPLEARVSPAFTEIDERVQARLLADLLDDMADTEAGRAALDFIAPYLSGD
DSAVALARSVAGKAEALMPAADWDTICDFAGISPTLAEDDVFATALTGDEADLFQILRTH
LDPTVKTQVKLGQDLAGLDLDTPTPATLKELERIFLFGPTAKTPFTPKIDGIASAKVRTT
IGNDMAAINDLAERVAEARTLRTGLETARKTHALHQFAARFLPAYARAKEARGWLDFDDL
IDKTRALLSDTKVAQWVLFRLDGGIDHILVDEAQDTAPRQWDIVQRLAEDFAAGEGARTD
VQRTIFVVGDKKQSIYSFQGADPSEFDRMRAHFKARLDEIDAPFQDAALIHSFRSAAPIL
SLVDRVAAKLGAPGLGDHIEHKAFFDAKPGRVDLWPAIEQVKGGDKPAWNDPQDLVSEDH
HSSVLAQTVAAQIGAMVAAPPMIDVEGKRRALTAGDILILVRSRSPLFHKIIAELKRADL
PVAGVDRSQLTSPLAVKDLMALCRFLATPEDDLSLACVLRSPLCGLSEAQLYDLAHGRPG
FLWSAMRDRISDFEDAHAILKDLRDSADFLKPYDLLERALIRHDGRRRLIARLGPEAEDA
VDAMLAQALAYEATEVPSLTGFAGWLDSGDVQVKRDLSQAEGQIRVMTVHGAKGLEAPVV
ILPDCAQKQGRGSSVSLLQPDGAPLIWAPGKGDEVDAVTDAADLKKQREAEEANRLLYVA
LTRAETWLIVAASGQLGKGDDASWYKIVADAVAGMEAAALTVEGLEGTGLRLQTGDWAEG
ERPAHATKTRATLPDWATAPAPAPEKDKPARRPSDLGGAKALPGMGDESATAMQRGTITH
LLLEHLPRLPQAAWPAAAPGIAALESDLSPEALAPMLEEATRVLTAPHLTHVFTQDTLAE
VEIAGHSPTLNADMIGIIDRLIVTPTRVTAVDFKTNATVPTAPEDTPDGLLRQMGAYAEL
LQPIYPDRDITTAILWSRTATLMELPHDIVSQALRRATSA
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgcaacccgcgcccagacccgcgctgccgatcccgcgacgtcgacctggctg
ggggccaatgcgggctccggcaaaacccgcgtgttaacggaccgcgtggcgcggctgctg
ctggacggtgtgccgcccgagcggatcctgtgtctgacctacaccaaggccgccgcgatg
gagatgcagaaccgcctgttctctcgcctcggcacctgggcgatgaaggatgatgccgcg
ctgcgtgacacgcttggcgcgattggcgtgggcggtttgacgcctgaattgctcgacacc
gcgcgcacgctctttgcccgggcgattgaggcgccgggcgggctgaagatccagacgatc
cattccttctgcgcctccgtcctgcggcgctttccgctggaggcacgcgtcagcccggcc
ttcacggagattgatgagcgcgtgcaggcacggcttttggccgatctgctcgacgatatg
gccgacacggaggcgggccgcgctgcgctcgacttcatcgcgccgtacctgtcaggcgat
gacagcgcggtggctctggcgcggtccgtcgcgggcaaggccgaggcgctgatgcccgcc
gccgattgggacacgatctgcgacttcgcaggcatttccccgacactggccgaggatgac
gtcttcgccaccgccctgaccggagacgaggcggacctgtttcagatcctgcgcacccat
cttgatccgaccgtgaagacgcaggtcaaactcggacaggatctggccggtttggatctg
gacaccccgacgcctgcgaccttgaaagagctggagcggatcttcctgtttggccctacc
gcgaagacgcccttcacgcccaagatcgacggtatcgccagcgccaaagtgcgcacgacc
atcggcaacgatatggctgcgatcaacgatctggcggagcgggtggccgaggcccgcacc
ctgcgcaccggccttgaaaccgcccgcaaaacccacgccctgcaccagtttgccgcccgc
ttccttcccgcctatgcgcgcgcgaaagaggcgcgggggtggctcgacttcgatgatctg
atcgacaagacgcgggcgcttttgtccgacacgaaggtcgcgcaatgggttctgttccgg
cttgacggcgggatcgatcacattcttgtagatgaagcgcaggacaccgccccgcgccaa
tgggacatcgtccagcgtctggctgaggacttcgcagcgggggaaggcgcgcgcacggat
gtgcaacgcacgatctttgtggtcggggacaagaagcagtcgatctattcgttccagggc
gcggatccgtcagaattcgaccggatgcgggcgcatttcaaggcgcgattggacgagatc
gacgcgccgttccaggacgccgcgctgatccactccttccggtccgccgcgccgatcctg
tcgctggtggatcgtgtggcggcaaagctcggtgcacccggccttggtgatcacattgaa
cataaagcgttttttgatgcaaagccggggcgtgtggatctgtggcccgccatcgaacag
gtgaagggcggggacaagcccgcctggaacgacccgcaggatctggtgagcgaggaccac
cattcctccgtgcttgcgcagaccgtcgccgctcagatcggtgcgatggtggccgcgccg
ccgatgatcgatgtggaggggaagaggcgggcgctgacggcgggcgatatcctgatcctt
gtccgctcccgctcgccattgttccacaagatcatcgccgaattgaagcgggcggatctg
cctgtggccggggtggaccggtcgcaactgacctctccccttgcggtcaaggacctgatg
gcgctgtgccggtttcttgcgacgcccgaagatgacctgtcgctggcctgcgtcttgcgc
tcccccctctgtggtctgtctgaagcgcagctttatgacttggcccatggccgtccgggt
ttcctctggtccgcaatgcgcgaccggatcagcgattttgaagacgcccacgcaattctg
aaagacctgcgcgacagtgccgatttcctgaaaccctacgatctgctggaacgggccctg
atccgccatgacggacggcgtcgcctgatcgcccggctggggccggaagccgaggatgcg
gtggacgcgatgctggcccaggcgctggcatatgaggcgacggaagtgccatcgctgacg
gggtttgcgggctggctggacagcggtgacgtgcaggtcaaacgtgatctcagccaggcg
gaagggcagatccgcgtcatgaccgtgcacggggccaaggggttggaggcgcccgtcgtg
atcctacccgattgcgcacaaaagcaggggcgcgggtcgtctgtcagcttgctgcaaccg
gacggtgcgccgctgatctgggcccccggcaaaggcgatgaagtggacgccgtcaccgac
gctgcagacctcaagaaacagcgggaggcagaggaagcgaaccgccttctctacgtcgcg
ctgacccgggcggagacctggttgatcgtggcggcgtccggccagcttggcaaaggcgac
gacgccagctggtacaagattgtcgccgacgcggtggcggggatggaggccgcagccctg
accgtggaggggctggagggcaccgggctgcggctgcaaaccggcgattgggcggaaggc
gaacggcccgcacatgccaccaagacccgcgcgaccctgcccgattgggccaccgcgcct
gcgcctgcgccggagaaggacaagcccgcgcgcaggccctcggatctgggcggggccaag
gcgcttccgggtatgggcgacgagagtgcgacagccatgcagcgcggcaccatcacgcac
cttttgctggaacatctgccgcggctgccccaagccgcctggccagccgccgcgcccggg
attgcagcgttggaaagtgacctgtcgccagaggccctcgccccgatgctggaggaggcc
acgcgggttctgaccgcaccgcatctgacgcatgtcttcacgcaggacacgttggcagag
gtggagattgccggccattcccccaccctcaacgccgatatgatcggcatcatcgaccgc
ctgatcgtaacacccacgcgcgtcaccgccgtggatttcaagaccaacgccactgtgccc
actgcgccggaagacacccccgatggcctcctgcgccagatgggggcctatgcggagttg
ctgcaaccgatctatcccgaccgcgacatcaccaccgcgatcctgtggtcccgcaccgcc
actttgatggagctgccacacgatatcgtgtctcaggcgctgagacgcgcaaccagtgct
tga
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