Jeotgalibaca arthritidis: G7057_03060
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Entry
G7057_03060 CDS
T06477
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jar
Jeotgalibaca arthritidis
Pathway
jar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7057_03060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jar03400
]
G7057_03060 (mfd)
Enzymes [BR:
jar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7057_03060 (mfd)
DNA repair and recombination proteins [BR:
jar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7057_03060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QII81554
UniProt:
A0A6G7K8G3
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All DBs
Position
complement(600693..604214)
Genome browser
AA seq
1173 aa
AA seq
DB search
MKDIQAYLKRSTLLADLISQAREAGNQLVTGISGSARNLLTTMVYDELDGPIVVWAANLL
QATQLYEDISQINPTIPTFLFPVEESLAVELAFSSPEYRSQRVEALHFLESGEKGIVVVP
TAGFKKLLAPVSIWRNHVLTFDIGNEIDFEQLPEKLVAMGYERESMVASPGEFSVRGDIM
DIYALNEEYPIRIEFFGSEVDRMRFFEPTTQKSFDEAVESVMVLPAQDTIFPPYILQEQV
EEIEKKVKKAEKSIKNEDVKKRLAVFFNDFIEKAQLGELPQNPKMYTSLFYPQMTTIMDY
MSKDTLIVMDEYGRTLESERTQNMEAADWEEMKIGEGVLLPKQQMTADIRDVVKQSEHRK
LFYSLFQKGLGNIRFTAVHPIQYRGLLQFFGQMPMVKSEVDRWLKQDATVFMVVPDKERA
EKVHQVFLDFDIESVIIGQDGFIENHVNIVVGGMAAGFELPMRKLVVMTEKELFNKATKR
QPRRQKMSNAERLKSYTELSAGDFVVHVNHGIGKYTGMETIVVDGVNQDYISILYQDGAK
LFIPVTQLHLVQKYVSSESKTPKVNKLGGTEWAKTKKKVASRVEDIADELIELYAKRESE
KGYAFPPDNQDQVDFENRFPYTETDDQLRSIEEIKKDMQKEKPMDRLLVGDVGYGKTEVA
MRAIFKAVLEGKQAAFLVPTTILAQQHYESLVQRFEDLPFEIGLLSRFRTKKQQEETIEG
IRKGSVDIIVGTHRLISKDVVFFDLGLLVVDEEQRFGVKHKERLKALKSTVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNMAAVRDGIEREMARGGQAFYVYNR
VETIERKADEIRVLVPDCRVGVAHGQMTEVQLENIMMDFVEGVYDVLVTTTIIETGVDIP
NANTLFVENADYMGLSQLYQLRGRVGRTNRIAYAYLMHQRDKILSEVSEKRLQAIKDFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVERKRGKGSRRKQVNV
EIDLAINAYIPATYIEDERQKIDMYKRIQQLKNEDDFYEIQDDFQDRFGDLPEEVTYLAQ
VGLIRHYAELAEAEQLKRQGDIVHITFDKEGTKRLQGVAIFEALSSIPLRAQVNMKKDQL
VVSIQIHKVAIPAWMDHLKAFLEASVAEQKEES
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacatacaagcctatttaaaacgatcaactttgctagcagatttaattagtcag
gctagagaagcaggtaatcaattagtaacgggtatatctggttcagcaagaaatttacta
acgactatggtctatgatgagttagacgggccgattgttgtttgggcagctaacctgtta
caggcaacacaactatatgaagatatcagtcaaattaatccaacaattcctaccttttta
tttccagtggaagagtcactggctgtagaattagccttttcttcgcctgaatatcgtagt
cagcgggttgaagcccttcattttttagaaagtggtgaaaaagggattgttgttgttcca
acggctggatttaaaaagttattagcacccgtttcaatttggcgtaatcacgtactaacc
tttgatattgggaatgaaattgactttgaacaactgccagaaaaattagtcgcaatgggc
tatgaacgcgagagtatggtagcttcaccaggtgagtttagtgttcgtggggacatcatg
gatatttatgcattgaacgaagaatatccaatccgaatcgaattctttgggtctgaagtt
gaccgcatgcgctttttcgaaccaacaactcaaaaatcctttgatgaggctgttgaatca
gtgatggttctgccagcccaagatacgatttttccgccgtatatattacaagagcaagta
gaagaaattgaaaagaaagttaagaaagctgaaaaatcaatcaaaaatgaggacgttaaa
aaacgactagccgttttctttaatgactttattgaaaaagcacaattaggtgaattaccg
caaaatccaaaaatgtatacctccttattttatccacaaatgacaaccattatggattat
atgtctaaagataccttaatcgtaatggatgaatatggtagaacgctagagagcgaacgc
actcaaaatatggaagcagccgattgggaagaaatgaagattggcgaaggggtcttgttg
ccgaaacaacagatgacagctgatattcgagacgttgtcaaacaaagtgagcaccgcaaa
ctcttttattctttattccaaaaagggttaggaaatatccgctttactgctgttcatccc
attcaatatcgtggtctcctacaattcttcggtcaaatgccaatggttaaatcagaagtg
gatcgctggctcaagcaagatgccaccgtatttatggtcgttcctgataaggaacgtgct
gaaaaggttcatcaagtcttccttgattttgatatagagagtgtcatcatcggtcaagat
ggctttattgaaaaccacgttaatattgttgtcgggggaatggcagctggctttgaacta
ccgatgagaaaattagttgtcatgacggaaaaagaactcttcaacaaagcgacgaaacgt
cagccacgtagacaaaagatgtcgaatgcggaacggttgaagagctatacagaattatca
gctggagactttgtcgtacacgttaatcacggtattgggaaatacacgggtatggagacg
attgtcgttgatggggttaatcaagactatatttcgattctttaccaagatggtgccaaa
ctctttattccggttacccagctgcatctcgttcaaaaatatgtgtcttcagagtctaaa
acacctaaagtcaacaaactaggtggtactgaatgggcgaaaacgaaaaagaaagttgct
tcaagagtagaagacattgcggacgagttgatagagctctatgctaaacgcgaatcagaa
aaaggctatgccttcccaccggataatcaagaccaagttgattttgagaatcgtttccct
tatacagaaaccgatgatcaattgagaagtattgaagaaatcaaaaaggatatgcaaaaa
gaaaaaccaatggatcgtctcttagtcggagatgttggatatggaaaaacagaagtggcc
atgcgtgctattttcaaagctgttctagaaggaaaacaagcagcttttctggtgccaacg
actattttggcacaacagcattatgaatcgttagtacaacgctttgaggatttaccattt
gagattggtcttttaagtcgcttccgtacgaagaaacagcaagaagaaaccattgaaggt
attcgtaagggcagtgtggatattattgtgggaacgcaccgtctcatttcaaaagatgtt
gtcttttttgacctcggtttattagtagtcgatgaagagcaacgtttcggtgtcaaacat
aaagaacgcttgaaggcgctgaagtcgacagtagatgtcttgactctaacggcaacgccg
attccgcgtaccttgcacatgtctatgttaggtgtccgcgacttgtcggttattgaaact
ccaccggctaaccgctatcctgtccaaacctacgtaatggagcaaaatatggctgctgtt
cgcgatgggattgaacgagaaatggcaaggggtggccaagctttttatgtctataatcgt
gtcgaaaccattgaacgtaaggcggatgaaatccgagtactcgttcctgattgcagagta
ggtgtggcgcatgggcaaatgacagaagttcaactagaaaatatcatgatggattttgta
gaaggtgtttatgacgtccttgttaccacaacaattattgaaacaggtgtggatattcca
aatgccaatacgctctttgttgaaaatgctgactacatgggcttgtcccaactttatcaa
ttaagaggacgagtagggagaacgaatcgaattgcctatgcttacttaatgcaccagcgc
gataaaatattaagtgaagtaagtgagaaacgcttgcaagccattaaggactttacagaa
ttaggatcaggattcaaaattgctatgcgtgatttgtctattcgtggagcaggaaacctc
ttaggagcccaacagcatggctttatcgattcagttggctttgatttgtattcagaaatg
ctgagcgaagcagtagaacgcaagcgtggcaaagggtcacgtcgcaagcaggtaaatgtt
gagattgatttagctattaatgcctatattccggcaacctatattgaagacgaacgtcaa
aaaattgatatgtataaacgcatccaacaactgaaaaatgaagatgatttctatgaaatt
caagatgacttccaagaccgttttggtgatttaccggaagaagtgacctatctcgctcaa
gtgggcttgattcgccactatgcagaattagccgaggcagaacagctaaaacgtcaaggc
gatatcgttcatattactttcgataaggaaggaacgaaacgactgcaaggagtagcgatt
ttcgaagcgcttagcagtatccctttacgtgcacaagtgaatatgaaaaaagaccaatta
gtggtatctattcaaattcataaggttgctattccagcatggatggatcatttgaaagca
ttcctagaagcaagcgtcgctgagcaaaaggaagaaagttga
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