Janthinobacterium tructae: FJQ89_21210
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Entry
FJQ89_21210 CDS
T06359
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jas
Janthinobacterium tructae
Pathway
jas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJQ89_21210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jas03019
]
FJQ89_21210
03009 Ribosome biogenesis [BR:
jas03009
]
FJQ89_21210
Enzymes [BR:
jas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJQ89_21210
Messenger RNA biogenesis [BR:
jas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJQ89_21210
Ribosome biogenesis [BR:
jas03009
]
Prokaryotic type
rRNA helicases
FJQ89_21210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QDG72662
UniProt:
A0A4Y6RI30
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All DBs
Position
4831290..4833452
Genome browser
AA seq
720 aa
AA seq
DB search
MSDTPISLFSDLNLSEPLIRALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAA
FALPILSRIDLKQSSPQALVLAPTRELAIQVAEAFQVYAAHIPGFHVLPIYGGQSYGPQL
SALRRGVHVIVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILKETPD
GHQTALFSATMPSVIKRIATTYLVNPAEVTVAAKTGTADNIRQRYWLVSGMHKLDALTRI
LEAEAFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQAQRERTIQQLKDGKIDIL
VATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKNLLKA
IERSTRQPISMLELPTIQAVNDVRIAKFKEQISETLALGELEQFQSLIEDFEREQNIPAI
EIAAALAKMARGNTPLLLDKNKAREQATWQDDRPVRQERFERNDRPERGDRFERNERSER
GERPAFPKKERISRPADAGMQTFRIEVGHQHGVKPGNIVGAIANEAGIDSKNIGRIEIYD
DYSVLDLPDTMPKELLDQLKSVWVAGQQLRISRDGDAPDLAPPAAPRKPFAAKSAPAFKD
APADAGEAAPAPRAPKKERPRPGVTAYRIEVGREHAVTPSNIVGAIANEANLEAKHIGRI
DIFDNYSVLDLPEGMPPEILDHLKSVVVSGQKLRISLDDGTTERKPAPARPKSPPRKTFK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacaccaatttccttattttccgaccttaacctgagcgagccgctgattcgc
gcgctcaaggatgtcggttacgaaacaccgtcgcctatccaggcggccacgattccatta
ttgctcgctaaccgcgacgtgctgggccaggcgcaaacaggcacgggtaagaccgccgcc
ttcgccttgcctatcctgtcgcgtattgatctgaaacaaagctcaccccaagccctggtc
ctggcaccgacgcgcgaactggccatccaggtcgccgaagcgttccaggtgtacgccgcc
cacattcccggcttccacgtgctgccgatctacggcggtcaaagctatggcccgcaactg
tcggccctgcgccgcggcgtgcacgtcatcgtcggcacccctggccgcgtcatcgatcac
ctggacaagggttcgctcgacctgtccaagctgaagacgctggtgctggacgaagccgat
gaaatgctgcgcatgggctttatcgacgatgtcgaacgcatcttgaaagaaacgccggat
ggccatcaaacggcgctgttctcggccaccatgccttccgtcatcaagcgcatcgccacc
acctacctggtcaatccagccgaagtgacggtcgccgccaagacgggcacggccgacaac
atccgccagcgttactggctggtgtcgggcatgcacaagctcgacgctttgacccgcatc
ctggaagcggaagcgtttgacggcatgatcatctttgcccgcaccaaactgggtacggaa
gagctggccggcaaactgcaggcacgcggcttctcggctgccgccatcaatggcgacatc
cagcaagcgcagcgcgagcgcacgatccagcagttgaaagacggcaagatcgacatcctc
gtggctaccgacgtggccgcccgcggcctggacgtcgagcgcatcagccacgtcgtcaac
tacgacgtgccgcacgatccggaaagctatacccaccgtatcggccgcacgggccgtgcc
ggccgcagcggcgaagcgatcctgttcatcaccccgcgtgaaaagaacttgctcaaggcc
atagaacgctcgacccgccagccgatcagcatgctggaattgccgacgattcaggccgtc
aacgatgtgcgtatcgccaagttcaaggaacagatcagcgaaaccctggccctgggcgaa
ctggagcaattccagtcgctgatcgaagatttcgaacgcgaacagaatattcctgccatc
gaaatcgccgccgccctggcgaagatggcgcgtggcaatacgccgctgctgctggacaag
aacaaggcgcgcgagcaagccacctggcaagacgaccgtccggtacgccaagagcgcttc
gaacgcaacgaccgtccggaacggggcgaccgttttgagcgtaacgagcgcagcgaacgt
ggcgaacgtccggccttcccgaaaaaggaacgcatttcccgtcctgccgacgccggcatg
cagactttccgtattgaagtcggtcatcagcatggcgtgaaaccgggcaatatcgtgggc
gccatcgccaacgaagcgggcatcgattcgaaaaatatcggccgcatcgaaatctatgac
gactacagcgtgctggatttgccagacaccatgccaaaagaattgctggaccagctgaag
tccgtttgggtcgctggtcagcaattgcgcatcagccgcgacggcgatgcaccggacctg
gcgccgccagccgcgccgcgcaagccattcgccgccaagtccgcgccagcgttcaaggat
gcgccagcggacgcgggcgaggcagcaccagcgccgcgcgcgccgaagaaggagcgtccg
cgcccgggcgtgacggcttaccgcatcgaagtgggtcgtgagcacgccgtgacgccaagc
aacatcgtgggcgccatcgccaacgaagcgaacctggaagccaagcatatcggccgtatc
gatatctttgacaactacagcgtgctggacttgccggaaggcatgccgccggaaatcctc
gaccacctgaaatcggtcgtcgtgtcgggccagaaactgcgcatcagcctcgatgacggc
acgacggagcgcaaaccggcgccagcgcgtccaaagtcgccaccgcgtaaaacgttcaag
taa
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