Janthinobacterium tructae: FJQ89_21540
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Entry
FJQ89_21540 CDS
T06359
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
jas
Janthinobacterium tructae
Brite
KEGG Orthology (KO) [BR:
jas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jas03016
]
FJQ89_21540
Enzymes [BR:
jas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FJQ89_21540
Transfer RNA biogenesis [BR:
jas03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FJQ89_21540
Prokaryotic type
tRNA splicing ligases
FJQ89_21540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QDG72712
UniProt:
A0A4Y6RI87
LinkDB
All DBs
Position
4904918..4906153
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AA seq
411 aa
AA seq
DB search
MKNEEYEVLHTEGSRPIKMWTRGVPVEEAAKKQLRNTAALPFIYKHIAVMPDVHLGKGST
IGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLTASDLPDNLGPLRSAIERAIPHGMSPKTR
GHRGRDEGSWQTPPSVVDAAWLQLKDEFDAICLKTPKLKNTNHYRHLGTLGSGNHFIEVC
LDEQGSVWFMLHSGSRGVGNAIGTHFIELAKQDMRTHFINLPDQDLAYLAEGTQHYDDYV
EAVGWAQRFARNNREVMMQNLIAAVRTVIHKPFQTHVEAVNCHHNYVQKEHHFGKDVLVT
RKGAVSARAGELGIIPGSMGAKSFIVRGKGNAESFHSCSHGAGRTMSRTEAKRRFNLADQ
IRATEGVECRKDENVIDEIPMAYKDIDAVMLAQRELVDVVHILKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaagaatacgaagtcctgcataccgaaggcagccgtcccatcaaaatgtgg
acccgtggcgtgcccgtcgaagaagcggctaaaaaacaattgcgcaacacggcggccctg
ccgttcatttacaagcatatcgccgtcatgcccgacgtccacctgggtaaagggtcgacc
atcggcagcgtgattcccaccctgggtgcggtgattccggcggcggtgggcgtggatatc
ggttgcggcatgatggcggcgaaaaccacgctgacggccagcgacttgcccgataacctg
ggaccactgcgcagtgccatcgaacgcgccattccgcacgggatgtcgccgaagacgcgc
ggccaccgtggccgcgacgaaggttcctggcagacgccgccatcggtagttgatgcggca
tggctgcaattgaaggatgaattcgatgccatctgcctgaaaacgccgaagctgaaaaat
acgaatcactaccgccacctgggaactttgggcagcggtaaccacttcatcgaagtgtgc
ctcgacgagcagggctctgtgtggttcatgctgcattccggctcgcgcggcgtgggcaat
gccatcggcacccatttcatcgaactggccaagcaggatatgcgcacgcacttcatcaac
ctgcccgaccaggacctggcttacctggccgaaggtacgcagcattacgacgattacgtg
gaagcggtgggctgggcgcagcgttttgcgcgcaacaaccgcgaagtgatgatgcagaac
ctgatcgcggccgtgcgcacggtcatccataaaccgttccagacgcatgtggaagccgtc
aactgccaccataactatgtgcagaaggaacaccacttcggcaaggacgtgctggtcacg
cgcaagggggccgtgtcggcccgtgccggcgagctgggaatcattcccggatccatgggc
gcgaagagttttatcgtgcgcggcaagggcaatgcggagagttttcatagctgcagccac
ggtgcgggacgcacgatgagtcgcacggaagcgaagcggcgcttcaacctggccgaccag
atccgcgccaccgagggcgtggaatgccgcaaggatgaaaatgtgatcgatgaaattccg
atggcctacaaggatatcgatgcggtgatgctggcgcagcgcgagctggtcgatgtggtg
catatcctgaagcaggtcgtgtgcgtcaaaggttaa
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