Jatrophihabitans sp. GAS493: SAMN05892883_2791
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Entry
SAMN05892883_2791 CDS
T11165
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
jat Jatrophihabitans sp. GAS493
Pathway
jat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMN05892883_2791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jat03400
]
SAMN05892883_2791
Enzymes [BR:
jat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAMN05892883_2791
DNA repair and recombination proteins [BR:
jat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMN05892883_2791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
Viral_helicase1
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
SOD73497
UniProt:
A0A286ERE6
LinkDB
All DBs
Position
I:2976762..2980061
Genome browser
AA seq
1099 aa
AA seq
DB search
MRDFDLLGDLPQGTTVLEASAGTGKTFTIAGLVTRYVAEGAARLDELLVVTFGRAATQEL
RDRVRERLVSARDGLADPAAARAASHDALLQYLATGSDVEVALRQHRLVLALGSFDSATV
ATTHQFCQQVLIGLGTAGDVDAGAVLVENLDDLILEVVQDLYLRKWVHGDVEIPPLTLTA
AQDLARAVVNDGQAVLVPDESAAVDTPALRRRFASAVRAEVDRRKRERRILGFDDLLTRL
QQTLADPYTGPSAAARLRARYRVVLVDEFQDTDPVQWDVLRLAFHGAATLVLIGDPKQAI
YAFRGADVQAYLAAAELADHQATLAQNWRSDPDLLRGLEAMFRGAALGDPRIVVQPVSAA
HAGRSLDVAGAPVRVRVVPRGAVDRLAVGPARDLVTRDVVAEIVDLLSSGALLSPRDGSP
ERLVRPGDIAVIVRTGQQLDLVHAALLAAGVPAVQRTTASVFRTAAGADWIVLLEALEQP
HRSGRLRRLAISPFVGLDAAGLEAVDVDRLGLRLRYWLSVFEERGIAALFETLSRDQRLP
SRLLGQLDGERRLTDLRHVGEALHAAAMAGPLGLTGSLEWLRHRVDESGDDSSVERSRRL
DSDDAAVQVVTVHASKGLEFPIVHVPFGWDRHAFEQEIPRFHDASARRVRNVGGPGSPDF
AGDQRRHNSEEFGEDLRLLYVALTRAQSQVTAWWAPSDRNTPSAPLHRLLFTDSPSAGIE
ERVPVPSDAAALARLSSRAVDGCLTVTAAPLRVAAAWQRPAATPASLAAAILGRTLDTSW
RRTSYSALRAGMHDATPAIGSEPEVDEKDDEPQTPMSAPPSNAELLAVASPMEALPGGAA
FGTLVHTVLEHVDPTSPELVDELRAQVRLQIARLGPSGLDADLLSESLLPSLRTPLGPLA
DGRALVDIAPVDRLTELNFELPMRGGDRPNGTSYLRDLAGLLRSHLPASDPLASYAELLD
DPVLGDAALRGYLGGSIDAVLRIGGRYVVVDYKTNRLGSPDAPLTAWDYRRPAMVEAMLH
AHYPLQALLYDVALHRFLRWRVPGYDPSVHLGGVLYLFLRGMCGPDVVADDGTVPGVFAW
QPPSSLVVAVSDVLAKGLS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
gtgagggacttcgacctgctgggggacttgccgcaggggacgaccgtcctcgaggccagc
gcgggcaccggcaagacgttcacgatcgccgggttggtgacacgctacgtcgccgagggt
gcggcccggctcgacgagctgctggtcgtgacgttcggccgggccgcgacgcaggagctg
cgcgaccgggtgcgggagcgactagtcagcgcgcgcgacgggctcgccgatccggccgcg
gcccgcgcggcgtcgcacgacgcgctgttgcagtacctggccaccggcagcgatgtcgag
gttgcgctgcgtcagcaccgcctcgtcctcgccctcggctcgttcgactcggcgacggtc
gccaccacccaccagttctgccagcaggtgctcatcgggctcggcacggccggcgatgtc
gacgccggcgccgtactcgtcgagaacctcgacgacctgatcctcgaggtcgtgcaggat
ctctacctgcgcaagtgggttcacggcgacgtcgagatcccgccgctcaccctgacggcg
gcgcaagacctggcccgcgcggtcgtcaacgacggccaggccgtgctcgtgcccgacgag
agcgcggccgtcgacacccccgcactgcggcgccggttcgcctccgcagtgcgggccgag
gtcgaccgccgcaagcgcgagcgccggatcctcggcttcgacgacctactcacccggctg
cagcagaccctcgccgatccgtacaccggaccgtcagccgccgcccgactgcgggcgcgc
taccgtgtcgtgctcgtcgacgagttccaggacaccgaccctgtgcagtgggatgtcttg
cggctcgcgttccacggcgcggccacgctcgtcctcatcggcgacccgaaacaggccatc
tatgcattccgtggggccgacgtccaggcctatctcgccgcggccgagctcgccgaccac
caggccaccctcgcgcaaaactggcgcagcgacccggacctgctgcgcggcctggaggcg
atgttccgcggtgccgcgctcggcgacccgcgcatcgtcgtccagccggtgtcggccgcg
cacgctggccgctcactcgacgtcgccggtgcgccggtgcgcgtccgggtagtcccgcgc
ggtgccgtggacaggctggcggtcgggccggcccgcgacctcgtcacccgcgacgtggtc
gccgagatcgtcgacctgctctcctccggcgcgctgctgagtccgcgcgacggctcgcct
gagcggctggtgcgtcccggtgacatcgcggtcatcgtccgcaccggccagcaactcgac
ctcgtacacgcggctctgctcgccgccggcgttccggccgtgcagcgcacgacggccagc
gtgttccgcaccgcggccggcgccgactggatcgtcctgctcgaagccctggagcagccg
caccgcagcggacggctgcgccggctggccatctcgccgttcgtcgggctagacgccgcc
gggctcgaggcggtcgacgtcgaccggctcgggttgcggctgcggtactggctcagcgtg
ttcgaggagcggggcatcgccgcgctgttcgagacgctcagccgtgaccagcggctgccg
tcgcggctgctcggccagctcgacggcgagcgccggttgaccgacctgcggcacgttggt
gaggcgctgcacgcggccgcgatggccgggccgctcggcctcaccgggagcctggaatgg
ctgcgccaccgggtcgacgaatcaggcgacgactcgtcggtcgagcgcagccgccggctc
gattccgacgacgccgcggtgcaggtcgtcaccgtgcacgccagcaaagggctcgagttc
ccgattgtccacgtgccgttcgggtgggaccggcacgcgttcgagcaggagatcccgcgg
ttccacgacgcttccgcccgtcgtgtgcggaacgtcggcgggccgggcagcccggacttc
gccggcgaccagcgacggcacaacagcgaggagttcggcgaggatctgcggctgctgtac
gtcgcgctgacccgcgcgcagtcgcaagtgacggcgtggtgggccccgagtgaccggaac
acgccgtccgcgccactgcatcggctgctgttcaccgattctccctcggccgggatcgag
gagcgggtgccggtgccgagtgacgctgccgcgctcgcccggctgtcgtcgcgggcggtg
gacgggtgtttgacggtaaccgcagcgccgttacgcgttgctgcggcgtggcagcgacct
gccgccacgccggcctcgcttgccgccgcgatccttggacggacgctagacacgtcctgg
cggcgcacgtcgtacagcgctctgagggccgggatgcacgacgcgacgcccgccatcggc
agcgagcccgaagtggatgagaaggacgacgagccgcagacgccgatgtcggcgccgccg
tccaatgcggagttgctcgcggtggcgtcgcccatggaggcgctgcccggcggcgccgcg
ttcggcacgctcgtccacaccgtcttggagcatgtcgacccgacctcgcccgaactcgtc
gacgagctgcgcgcgcaggtccggctgcagatcgcccggctcgggccgtccgggctcgat
gccgatctgctctccgagtcgctgctgccgtcgttgcgcacgccgctcggccctctcgcc
gacggacgtgcattggtcgacattgcgccggtcgatcggttgacggagctgaatttcgag
ctgccgatgcgcggcggtgaccggccgaacggcacgtcctacctgcgcgatctcgccggc
ctgctccggtctcacctgccggcgtccgatccgctcgcgtcctacgccgagctcctcgac
gatccggtgctcggcgacgcggcgctacgcggctacctcggcggcagcatcgacgcggtg
ctgcggatcggcgggcgctacgtcgtcgtcgactacaagaccaaccggctcggctcgccc
gacgcgccactgacggcgtgggactaccgccgtccggcgatggtcgaggcgatgctgcac
gcgcactacccgctgcaggcgctgctctatgacgtcgcgctgcaccggtttctgcgttgg
cgggtccccggctatgacccgtcggttcacctgggcggcgtgctgtatctgttcctgcgc
ggcatgtgcgggccagacgtagtggccgacgacggcaccgtgccgggggtcttcgcttgg
cagccgccctcctctcttgtcgtcgcggtgtcggacgtccttgcgaagggcctgtcgtga
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