Jatrophihabitans sp. GAS493: SAMN05892883_3651
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Entry
SAMN05892883_3651 CDS
T11165
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jat Jatrophihabitans sp. GAS493
Pathway
jat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMN05892883_3651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jat03019
]
SAMN05892883_3651
03009 Ribosome biogenesis [BR:
jat03009
]
SAMN05892883_3651
Enzymes [BR:
jat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMN05892883_3651
Messenger RNA biogenesis [BR:
jat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMN05892883_3651
Ribosome biogenesis [BR:
jat03009
]
Prokaryotic type
rRNA helicases
SAMN05892883_3651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
SOD74465
LinkDB
All DBs
Position
I:3929406..3931274
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AA seq
622 aa
AA seq
DB search
MTNSDDDEQISFAELGIDERVLRALVDVGYESASPIQAATIPALLSGRHVVGLAQTGTGK
TAAFAIPILSQIDLTQHEPQALILAPTRELALQVSEAISKYAHHMPGLNVLAIYGGQSYG
IQLAGLRRGAHIVVGTPGRVIDHLNKKTLDLTKLRFLVLDEADEMLQMGFQEDVETILAD
TPEDKQVALFSATMPSQIRRISKRYLTDAAEITVKSKTMTAANTRQRYIQVANPQKLDAL
TRVLEVEPFEAMIIFVRTKSATEDLAERLRARGFAAAAINGDLVQAQRERTIGQLKTGDL
DILVATDVAARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEALMFVTPREKHL
LASIERATRQPVTEMPLPTVDDVNTSRVAKFTDAITASLLSPEISLFRGLIEDYQREHNV
PVVDVAAALAVLSQEDSFLLKPEPPAPRRAAREGSGERNFDRPDRGPRSDRPDRPRRGDG
DDRGRPRRSDVEMATYRIRVGRRQKVMPGSIVGAIANEGGLGRADFGAIDIRVDHTLVEL
PKDLSASTLAALKSTRISGQLIELALASPADMAPSEGGNQGGYQGKRPSRPGSVGSAGGK
KFADKRPSKDGKAKEKKPRHPR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgactaactccgacgacgacgagcagatttccttcgctgaactgggcatcgacgaacgc
gtgctgcgcgcgctggtcgacgtgggctacgagagcgcctctcccattcaggcggcaacg
atccccgcactcctctccgggcgccacgtcgtcggcctggcccagacgggcaccggcaag
accgccgccttcgccatcccgatcctctcccagatcgacctgactcagcacgagccgcag
gccctgatcctggccccgacccgggagctggccctgcaggtgtcggaggcgatcagcaag
tacgcccaccacatgccgggactgaatgtgctggcaatctacggtggtcagagctatgga
atccagctcgccgggctgcgccgcggcgcgcacatcgtcgtcgggacgcccgggcgggtc
atcgatcacctgaacaagaagacgctggatctcaccaaacttcgcttcctcgtgctcgac
gaagccgacgagatgctgcagatgggcttccaggaggacgtcgagacgatcctggccgac
actcccgaagacaagcaggtggccctcttctcggccaccatgccgtcgcagatccggcga
atctcgaagcggtacctcaccgacgccgccgagatcacggtcaagtccaagacgatgacg
gcggccaacacccggcagcgctacatccaggtcgcgaacccgcagaaactcgacgcgctc
acccgggtcctggaggttgagccattcgaggcgatgatcatcttcgtccgcaccaagagc
gccaccgaggacctggccgagcggctacgggcccggggcttcgccgccgccgccatcaac
ggagacctcgttcaggcccagagggaacgcaccatcggccagttgaagaccggtgatctg
gacatcctggtcgccaccgacgtcgccgcccgcggcctcgacgtcgagcgcatcagtcac
gtcctcaactacgacatcccgcacgacagcgagtcctacgtgcatcgcatcggacgcacc
ggccgggccgggcggtcgggcgaagcgctcatgttcgtgacgccgcgggagaagcacctg
ctcgcctcgatcgagcgggccacgcgccagccggtcaccgagatgccgctgcccaccgtc
gacgatgtgaacacctcgcgcgtagcaaagttcaccgatgccatcacagcgagcctcctc
tccccggaaatctctttgtttcgtgggttgatcgaggattatcagcgcgagcacaacgtt
ccggtggtggacgtcgcagcggccctggccgtcctctcccaggaggactccttcctcctc
aagcccgagccgccggcgccgcgccgcgccgcgcgcgagggcagcggcgaacgaaacttc
gatcgccccgaccgcggtccgcgctccgaccgtccggatcgcccgcgccgtggcgacggc
gacgatcgcggacgcccgcgccgctccgacgtggagatggcgacgtaccgcatccgggtc
gggcgccggcagaaggtcatgccgggctcgatcgtcggggccatcgccaacgaaggtggg
ctcggacgggccgacttcggcgccatcgacatccgggtcgaccacacgctggtcgagttg
ccgaaggatctctcagcgagcaccctggccgcgctgaagtcgacgcgcatctccggccaa
ctgatcgagctcgccctcgcgagcccggccgatatggcaccgtcggagggcggcaatcag
ggcggctatcagggcaagcgccccagccgcccgggctcggtcggctcggccggcggcaag
aagttcgccgacaagcgcccgtccaaggacgggaaggcgaaggagaagaagccccgccac
ccgcggtaa
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