Jatrophihabitans sp. GAS493: SAMN05892883_4120
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Entry
SAMN05892883_4120 CDS
T11165
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
jat Jatrophihabitans sp. GAS493
Brite
KEGG Orthology (KO) [BR:
jat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jat03032
]
SAMN05892883_4120
03400 DNA repair and recombination proteins [BR:
jat03400
]
SAMN05892883_4120
Enzymes [BR:
jat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SAMN05892883_4120
DNA replication proteins [BR:
jat03032
]
Prokaryotic type
DNA Topoisomerases
SAMN05892883_4120
DNA repair and recombination proteins [BR:
jat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SAMN05892883_4120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
SOD74926
UniProt:
A0A286EVK2
LinkDB
All DBs
Position
I:complement(4462599..4463606)
Genome browser
AA seq
335 aa
AA seq
DB search
MTRLRTVSPTEPGWSRRRSGRGFRYFDADGSALRAEEVQRVKALVIPPAWADVWICAQPN
GHIQAIGTDARRRRQYIYHPQWRVRRDAAKHDRVLKVAARLPAARLEVAASLTGQGMPRE
RALAAAFRLLDLGYFRIGSDSYVTSNGSYGLTTLEIRHVQRHGATIVFEFAAKSGISQHI
EITDPAALAAVRTMTRHRRRTAPLLAYQASKGWQPLEAPDVNEYLKELLGDEMTAKDFRT
WHGTVYAAVALARQTPADTPTKRKRAIASAMRDVADHLGNTPAVARSAYVDPRLIDLYAD
GQTIAASLPRIEKLGERDPQRQERLERAVRRLLKT
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgacccggctgcgcactgtctcaccgaccgaaccgggctggtcgcggcgaagatcaggc
cgtggattccggtacttcgacgcggacggctccgccctgagggccgaagaggtccagcgc
gtcaaggcgctggtcatcccgccggcgtgggcggacgtctggatctgtgcccagcccaat
gggcacattcaggccatcggaaccgacgcacgaaggcgccgacagtacatctaccacccg
cagtggcgggtgcggcgtgatgccgccaagcacgaccgggtcttgaaggttgccgcccgt
ctcccggccgcccgcctcgaggtcgccgcctcgctcaccggccagggcatgccgcgagaa
cgggccctggccgccgctttccggctgctcgacctcggatacttccgcatcggcagcgat
agctatgtgacgagcaacggctcctacggcctgacaacactggagattcggcacgtccag
cgacacggcgccacgattgtcttcgagttcgcggcgaagtcgggcatctcccagcacatc
gagatcaccgatccggcggcgctggccgctgtccgcacgatgacccggcatcgacgccgc
acggcgccgctgctggcctatcaggcgtcgaagggctggcaaccgctagaggccccggac
gtcaatgaatacctgaaggaactgctcggggacgagatgacggccaaggacttccggacc
tggcacggcacggtgtacgcggccgtcgcgttggcccggcagacgccagcggataccccg
accaagcgcaagcgcgcaatcgcctcggcgatgcgcgacgttgccgatcatctgggaaac
acgcccgcggtcgcgcgatcggcctacgtcgatccgcgcctgatcgacctctacgccgac
ggtcagaccatcgcggcgtccctgcctcgcatcgagaaactgggagagcgagacccgcag
cggcaggagaggctggagcgggcagtgcgccggttgctgaagacctga
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