Antarcticirhabdus aurantiaca: OXU80_07220
Help
Entry
OXU80_07220 CDS
T09604
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jav
Antarcticirhabdus aurantiaca
Pathway
jav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OXU80_07220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jav03019
]
OXU80_07220
Enzymes [BR:
jav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OXU80_07220
Messenger RNA biogenesis [BR:
jav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OXU80_07220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
WAJ29993
LinkDB
All DBs
Position
complement(1533560..1534975)
Genome browser
AA seq
471 aa
AA seq
DB search
MTQTDFQAFGLADTLLKALALLDITTPTPIQARAIQPQMEGRDVLGIAQTGTGKTAAFSL
PLLHGLLTRHVGRPVPKTPKALILAPTRELASQIADSVKDYTVGTKLTHTVVFGGVSIRP
QIDTMRRGVDIVIATPGRLLDLVNQRAISLSGVRFVVLDEADRMLDMGFVRDVMRIVDEL
PEERQSLLFSATMPRSVEDLSRRILTNPVRVEVTPEVVTVEKIAQSVYSVPQKAKKLWLI
EALPGFEKTVIFTRTKHGANRLSEDLAKAGIEALAIHGNKSQGARQKALAAFHSGTVPVL
VATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGKSGIAVTLLDPSERAKLRQ
VEKLTGLRFDIQPTNFATAMPAGSAEEEREDRRPRRGRGPGQGRPNTGGGNANANAKGNN
RRRSGHGGHGGHPGAGESQGAKGGRPQRRAGNQGGGRRSDRPSSAGRTVNG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagaccgatttccaggcgttcggcctcgccgacacgcttctcaaggcgctcgcg
ctcctcgacatcacgacccctaccccgatccaggcccgggcgatccagccccagatggaa
gggcgcgacgtcctcggcatcgcccagaccggtaccggcaagaccgccgccttctcgctg
ccgctgctgcacgggctgctcacccgccatgtcgggcgcccggttcccaagaccccgaag
gccctgatcctcgccccgacgcgcgagctcgcctcgcagatcgccgactcggtgaaggac
tacaccgtcggcaccaagctcacccacaccgtcgtcttcggcggcgtgtcgatccgcccg
cagatcgacaccatgcgccgcggcgtcgacatcgtcatcgcgacgccgggccggctcctc
gacctcgtcaaccagcgcgccatcagcctgtccggcgttcgcttcgtcgttctcgacgag
gctgaccgcatgctggacatgggcttcgtgcgcgacgtgatgcgcatcgtcgacgaattg
cccgaggagcgccagtcgctgctcttctcggccaccatgccgagaagcgtcgaggacctg
tcgcgtcgcatcctgaccaatccggttcgcgtcgaggtgacgcccgaggtggtcacggtg
gagaagatcgcccagagcgtctactccgtgccgcagaaggccaagaagctctggctgatc
gaggccctgccgggcttcgagaagaccgtgatcttcacgcgcaccaagcacggcgccaac
cgcctgtccgaggacctcgccaaggcgggcatcgaggcgctcgccatccacggcaacaag
agccagggcgctcgccagaaggcgctcgccgccttccattccggcacggtgccggtgctg
gtggcgaccgacatcgtggcgcgcggcatccacgtcgacgacatcagccacgtcgtcaac
ttcgatctgccggaagagccggagtcctacgtccaccgcatcggccgcacggcccgcgcg
ggcaagtccggcatcgccgtgacgctgctcgatccgtccgagcgcgccaagctgcgccag
gtcgagaagctgacgggcctgcgcttcgacatccagccgacgaacttcgcgaccgcgatg
cccgccggctcggccgaggaggagcgcgaggatcgtcgtccccggcgcggtcgtggcccc
ggtcagggacgcccgaacaccggcggcggcaacgccaatgccaatgccaagggcaacaat
cgtcgccgttcgggccatggcggtcatggcggtcatcccggcgcgggcgagagccagggc
gccaagggtggacgcccgcaacgccgcgccggcaatcagggcggcggccgtcggtcggac
cggccgagctcggccggtcgcaccgtcaacggctga
DBGET
integrated database retrieval system
