Antarcticirhabdus aurantiaca: OXU80_08255
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Entry
OXU80_08255 CDS
T09604
Name
(GenBank) helicase-related protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jav
Antarcticirhabdus aurantiaca
Pathway
jav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OXU80_08255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jav03400
]
OXU80_08255
Enzymes [BR:
jav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OXU80_08255
DNA repair and recombination proteins [BR:
jav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OXU80_08255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
AAA_30
ResIII
UB2H
RecG_dom3_C
Cas3-like_C_2
TPP_enzyme_N
Motif
Other DBs
NCBI-ProteinID:
WAJ30186
LinkDB
All DBs
Position
complement(1737098..1740535)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSRTAARESREPEAKAKTAEPSPKKAKAEPAAERRARKRLVAESTTGSSSSPPEATIAPA
GPIAALGFNGAIAGILAERARRPGAKPILYVSRSASEAVCLHSILEALHEGHRVAYLPPW
DVPPLEGVEPSRAVTGRRMSVLRWLTDPKHRPAITVTTTDAILRRVPPRSLWDTTHHVEF
RVGDPIDLKALEDTLLRIGYSFDGRVDEAGEVAFRGRVVDIFPAAAPRPCRVEFENGRVT
QILSYDPATQRSLEPTEHLIVDPASEIVLADATDARAGRAPAERENRLADFYGTLDSVFD
YLPDAELFVEEGAGRRVEVFLEQAREAQALSLRTEGRGRRPPKLESVFLTKEERGERFAR
HAVTPVVSKGADRHVPRFAAERAPNKAFAAFAASHADKHLVLAAPSAPIAAELRRRARRI
LKRDIVEAARWEDVRAAEPGALLSMILPVDRGSVAPETGTVIVAAADLLGSFARSRDAQD
EAAAAFGIDALSPGDVVVHMDHGLGVLDGIETVEADGGARDVLSLRYRDGAKLMVPVGEI
GALWRYGGEEEAVTLDRLASEAWLKRRNAMLREIEEAARAMAELGLKRARAKGRVVEAPR
QRLERFAEGFPYELTAGQAAALDAILADLGSGRPMDRLLCGDVGFGKTEVALRAIAAVVF
AGGQVALAAPTTVLARQHLRNLSRRFAPFGIEVAELSRMTERADQARVKAGLADGSIPIV
VGTHTLAADAVTFRDLALLVVDEEQRFGTKDKDKLREKARGGHVLTLTATPIPRTLESAF
VGLHDVSVITTAPTNRQAVRTEVRSFDDDLVREALTREAARGGRSFMVCPRVEDIEPMAA
RLARIVPKLKTVVAHGKLPPDEIDRVMLGFAEGEGDVLLATNIVESGIDVPAANTLVVWR
PDRFGLSQLHQLRGRVGRSARRGLALLLTDPKESLSEGAERRLASLTELSALGSGFAISA
RDLDLRGAGDLLGETQAGHMKLLGLDLYRHYLDLALAKAETGRDDGDWRLEIALGLSGRI
PPDYVSDAGQRIALYRRLDRLSDAAEVARLEAEIADRFGTPPHELQVLLSRARLRAACAA
AGISKLEGGPAALAVTFRPGMEPEDDAPVPDSAWKNNRLIVSRASETPPERLALAEELVA
ALSDR
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaaccgccgcgcgcgagagccgggagcccgaggcaaaggcaaagacggccgag
ccgtcgccgaagaaggcgaaggccgagcctgccgccgagcgccgcgcgcgcaagcgcctg
gtcgccgagtccacgaccgggtcctcgtcgtcgccacccgaagcgaccatcgctcccgcc
ggccccatcgccgcgctgggcttcaacggcgccatcgccggcatcctcgccgagcgcgcg
cgtcgcccgggtgccaagcccatcctctacgtgtcgcgctccgcctccgaggccgtctgc
ctccattccattctcgaagccctgcacgagggccatcgcgtcgcctacctgccgccctgg
gacgtgccgccgctggagggcgtcgagccctcgcgcgccgtcaccgggcgacgcatgagc
gtgctgcgctggctcaccgatccgaagcaccgccccgccatcaccgtcaccaccaccgac
gcgatcctgcgccgcgtgccgccccgctccctctgggacacgacccaccacgtcgagttc
cgcgtcggcgatccgatcgacctcaaggcgctcgaggatacgctcctgcgcatcggctac
agcttcgacgggcgcgtcgacgaggccggcgaagtcgcctttcgcgggcgggtcgtcgac
atcttccccgccgcggcgccccggccctgccgcgtcgagttcgagaacggccgcgtcacc
cagatcctgtcctacgatccagccacgcagcgcagcctggagccgaccgagcacctcatc
gtcgaccccgcatccgagatcgtgctggccgatgccaccgacgcgcgcgcggggcgcgcc
ccggccgagcgggagaaccggctcgccgacttctacggcaccctcgattcggtcttcgac
tatctcccggacgccgaactcttcgtcgaggaaggcgccggccgccgcgtcgaggtcttc
ctggagcaggcgcgcgaggctcaggccctgagccttcggaccgaagggcgcgggcggcgc
ccgcccaagctcgaatcggtcttcctcacgaaggaggagcgcggcgagcgcttcgcccgc
cacgcggtgacgcccgtcgtgtccaagggcgccgaccgccacgtgccccgcttcgcggcc
gaacgcgccccgaacaaggccttcgccgccttcgccgcgtcccacgccgacaagcacctc
gtcctcgcagccccgagcgcaccgatcgccgccgagctgcgccgccgggcgcgccgcatc
ctcaagcgcgacatcgtcgaggcggcgagatgggaggatgtgcgcgccgccgagcccggc
gccctcctgtccatgatcctgccggtcgatcgcggctcggtcgcgcccgagaccggcacc
gtgatcgtcgcggcggccgatctgctcggttccttcgcccgcagccgcgacgcccaggac
gaagccgcggcggccttcggcatcgacgcgctctcgcccggcgacgtcgtcgtccacatg
gatcacggcctcggcgttctcgacgggatcgagacggtggaggccgacggcggcgcgcgc
gacgtcctgtccctgcgctaccgcgacggcgccaagctcatggtgccggtcggcgagatc
ggcgcgctctggcgctacggcggcgaggaggaggcggtgacgctcgaccgcctcgccagc
gaggcctggctgaagcggcgcaacgccatgctgcgcgagatcgaggaggccgcccgcgcc
atggccgagctgggcctgaagcgcgcccgcgccaagggccgcgtcgtcgaggccccgcgc
caacggctggaacgcttcgccgaagggttcccctacgagttgacggccggacaagccgcc
gccctcgacgcgatcctcgccgatctcggctccggccgcccgatggacaggctgctctgc
ggcgacgtcggcttcggcaagacggaggtcgcgctgcgcgccatcgcggccgttgtcttc
gccggcgggcaggtcgcgctcgcggcccccaccacggttctcgcccgccagcacctgcgc
aacctgtcccgccgcttcgcgcccttcggcatcgaggtcgccgagctgtcgcgcatgacc
gagcgcgccgaccaggcgcgggtcaaagcggggctcgccgacggctcgatcccgatcgtc
gtcggcacccacaccctcgccgcggacgccgtgaccttccgcgacctcgccctcctcgtc
gtcgacgaggagcagcgcttcggcaccaaggacaaggacaagctgcgcgagaaggcccgg
ggcgggcacgtcctgactctcaccgcgacgccgatcccgaggacgctggagtccgccttc
gtcggccttcacgacgtcagcgtcatcaccaccgcgccgacgaaccggcaggccgttcgc
accgaggtgcgctccttcgacgacgatctcgtgcgcgaggcgctcacgcgcgaggccgcc
cgcggcggacgctccttcatggtctgcccgcgcgtcgaggacatcgagccgatggcggcg
cgcctcgcccgcatcgtgccgaagctcaagaccgtcgtcgcccacggcaagctgccgccc
gacgagatcgaccgcgtgatgctcggctttgcggagggcgaaggcgacgtgctgctcgcc
accaacatcgtcgagagcggcatcgacgtgcccgccgccaacaccctcgtcgtctggcgt
ccggaccgcttcggcctgtcgcagctccaccagctgcgcggccgcgtcggccgctcggcc
cgacgcggcctcgccctcctcctcaccgatccgaaggaaagcctgtcggaaggcgccgag
cgccgcctcgccagcctcaccgagctctcggcgctcggctcgggcttcgcgatctccgcc
cgcgacctggacctgcgcggtgccggcgaccttctcggcgagacgcaggccgggcacatg
aagcttctcggcctcgacctctaccgccattatctcgacctcgccctcgccaaggcggag
accggccgcgacgacggcgactggcgcctggagatcgcgctcggtctgtccggccgcatt
ccgccggactacgtgtccgacgcgggccagcgcatcgcgctctaccgccgcctcgaccgg
ctgagcgacgcggccgaggtcgcgcggctggaggccgagatcgccgaccgcttcggcacg
ccgccgcacgagctgcaggttctcctgtcccgcgcccggctgcgggccgcctgcgcggcg
gctggcatttccaagctggagggcgggcccgcagcgctcgccgtgaccttccggccgggc
atggagccggaagacgacgccccggttccggactcggcctggaagaacaaccggctcatc
gtgtcccgtgccagcgaaacgccgccggaacgcctggcccttgccgaagaactggtcgcc
gctctgtccgaccgctga
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