Antarcticirhabdus aurantiaca: OXU80_11640
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Entry
OXU80_11640 CDS
T09604
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jav
Antarcticirhabdus aurantiaca
Pathway
jav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OXU80_11640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jav03021
]
OXU80_11640 (rpoC)
03400 DNA repair and recombination proteins [BR:
jav03400
]
OXU80_11640 (rpoC)
Enzymes [BR:
jav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OXU80_11640 (rpoC)
Transcription machinery [BR:
jav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OXU80_11640 (rpoC)
DNA repair and recombination proteins [BR:
jav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OXU80_11640 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WAJ30806
UniProt:
A0ACD4NVP8
LinkDB
All DBs
Position
2413946..2418142
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNIFNPQVAAQTFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLTEEEYMIAIDEYGEDSFTA
LIGAEAIQELLASMDLETIAGTLREELATTTSELKTKKLMKRLKIVENFIESGNKPEWMI
MRVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIMNENEPGQGMAFSDLGEMEHAIA
AKAVTLHTKIKGRFRSIDKDGNEYSKIYETTPGRMLIGELLPKNPNLPFDVCNELMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFRHACLAGISFGKDDMVIPETKARLIEETQAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCTDKIAEEMMARIKAVEFNKENGRQKPMNSIY
MMSHSGARGSPTQMRQLAAMRGLMTKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIITQTDCQTPNGLTMQPIVDAGQVVATLGQRILGRT
ALEDILHPITGDVLVKGGVTVEEKDIEVIEKAGIQSVKIRSALTCEVRTGICAVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSFLEASYEGSVKIRNRN
VVRDSDGRLVAMGRNMAILILDQGGKERASHRVTYGSRIYVDDGDTVRRGQRIAEWDPYT
RPVLTELDGVVEFEDMVEGISVSEQTDESTGITKRAVIDWRASPRGQDLKPAMVIKGNDG
KILKLARGSDARYFQSVDAILSVEPGSKVKAGDVLSRIPMESAKTKDITGGLPRVAELFE
ARKPKDNAIIAEIDGTVRFGRDYKNKRRIIIEPHEDGVEPVEYLIPKGKPFHLQEGDVIE
KGDYILDGNPAPHDILAIRGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVE
IVESGDSGYIPGDHVDRIELAELNERLEEEGKKPASGNPVLLGITKASLQTPSFISAASF
QETTRVLTEAAVAGKTDTLQGLKENVIVGRLIPAGTGGMMTQVRRIASSRDDLILEDRRT
AANTQESDRLLTNLGAAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaacatcttcaacccgcaggtcgcggcgcagaccttcgactcc
atccggatctcgctggcgagcccggagaagatcctttcttggtcgttcggcgagatcaag
aagccggagacgatcaactaccgcacgttcaagccggagcgcgacggtctgttctgcgcg
cgcatcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tataagggcatcatctgcgagaagtgcggcgtcgaggtcaccctctcgcgcgttcggcgc
gagcgcatgggccacatcgagctggccgccccggtcgcgcacatctggttcctgaagtcg
ctcccgagccgcatcggtacgctgctcgacatgaccctgaaggacatcgagcgcgtcctc
tacttcgagaactacatcgtcaccgagcccggactcaccgccctgaaggagcaccagctc
ctgacggaggaggagtacatgatcgccatcgacgagtacggtgaggactcgttcaccgcg
cttatcggcgccgaggcgatccaggagctgctcgcttcgatggatctcgagacgatcgcc
ggcacgctccgcgaggagctggcgacgacgacgtccgagctcaagacgaagaagctgatg
aagcggctgaagatcgtcgagaacttcatcgagtccggcaacaagccggagtggatgatc
atgcgcgtcgtgcccgtgatcccgccggacctgcgcccgctcgtcccgctcgacggcggc
cgctttgcgacctccgacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgcccggcatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtggacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttc
cgccagaacctcctcggcaagcgcgtcgactattctggccgctcggtcatcgtcacgggt
ccggagctcaagctccaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgcgcgcctcgacgccaagggcttctcctccacggtgaagcaggcgaag
aagctcgtcgagaaggagcgtccggaagtctgggacatcctggacgaggtgatccgcgag
cacccggttctcctcaaccgcgcgccgacgctgcaccgcctcggcatccaggcgttcgag
cccatcctgatcgagggcaaggcgatccagcttcacccgctggtctgcacggccttcaac
gcggacttcgacggcgaccagatggcggtgcacgtgcccctgtccatcgaggcgcagctc
gaagcgcgcgtcctgatgatgtcgacgaacaacatcctgcacccggccaacggtcagccg
atcatcgtgccgtcgcaggacatggttctcggcctctactacctctcgatcatgaacgag
aacgagccggggcagggcatggccttctccgatctcggcgagatggagcacgccatcgcg
gccaaggcggtgacgctgcacaccaagatcaagggccgcttccgctcgatcgataaggac
ggaaacgagtactcgaagatctacgagaccacgcccggccgtatgctcatcggcgagctg
ctgcccaagaacccgaacctgcccttcgacgtctgcaacgagctgatgacgaagaagaac
atctccaagatgatcgacaccgtctaccgccactgcggtcagaaggacacggtgatcttc
tgcgaccgcatcatgcagctcggcttccgccacgcctgcctcgccggcatctcgttcggc
aaggacgacatggtcatcccggagaccaaggcccgcctgatcgaggagacgcaggcgctc
gcgaaggaatacgagcagcagtacaatgacggcctgatcacgcagggcgagaagtacaac
aaggtggtcgatgcctgggccaagtgcacggacaagatcgccgaagagatgatggcccgc
atcaaggcggtcgagttcaacaaggaaaacggccgtcagaagccgatgaactcgatctac
atgatgtcgcactcgggtgcccgcggctcgccgacgcagatgcgtcagctggcggcgatg
cgcggcctgatgaccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtgctcgagtacttcaactcgacccacggcgcccgcaagggtctg
gccgacaccgccttgaagacggcgaactcgggctacctcacccgccgcctcgtcgacgtg
gcgcaggactgcatcatcacgcagaccgactgccagacgccgaacggcctgacgatgcag
cccatcgtcgacgccggacaggtcgtcgcgacgctcggccagcgcatcctgggccgcacg
gccctggaggacatccttcacccgatcaccggcgacgtcctcgtgaagggcggcgtcacg
gtcgaggagaaggacatcgaggtcatcgagaaggccggcatccagtcggtgaagatccgc
tcggcgctgacctgcgaggtccgcaccggcatctgcgccgtctgctacggtcgcgacctc
gcgcgcggcacgcccgtcaacatgggcgaggccgtcggcgtcatcgcggcgcagtcgatc
ggcgagccgggcacccagctcaccatgcgcaccttccacatgggcggcacggcgcaggtg
gtcgactcgtccttcctcgaggcctcttacgagggctcggtgaagatccgcaaccgcaac
gtcgtgcgcgactcggacgggcgcctcgtcgccatgggccgcaacatggccatcctgatc
ctcgatcagggcggcaaggagcgcgcctcgcaccgcgtcacctacggcagccgcatctac
gtcgacgacggggatacggtccgccgcggccagcgcatcgcggagtgggacccctacacc
cgcccggttctcaccgagctggacggcgtggtggagttcgaggacatggtcgagggcatc
tcggtgtccgagcagaccgacgagtcgaccggcatcaccaagcgcgcggtcatcgactgg
cgggcgagcccgcgcggtcaggacctcaagcccgcgatggtcatcaagggcaatgacggc
aagatcctgaagctggcgcgcggctcggacgcccgctacttccagtcggtggacgccatc
ctctccgtcgagcccggctcgaaggtgaaggcgggcgacgtcctgtcgcgtattccgatg
gaaagcgcgaagaccaaggacatcaccggcggtctgccgcgcgtcgccgagctgttcgag
gcccgcaagccgaaggacaacgccatcatcgccgagatcgacggcacggtgcggttcgga
cgcgactacaagaacaagcgccggatcatcatcgagccgcacgaggacggcgtcgagccg
gtcgagtacctgatcccgaagggcaagccgttccacctgcaggaaggcgacgtcatcgag
aagggcgactacatcctggacggcaaccccgcgccgcacgacatcctggccatccggggc
gtcgaggcgctggcgagctacctcgttaacgagatccaggaagtctaccggctccagggc
gtgctcatcaacgacaagcacatcgaggtcatcgtgcggcagatgctgcagaaggtcgag
atcgtggagtcgggcgattcgggctacatcccgggagatcatgtcgaccggatcgagctg
gcggagctgaacgagcgcctggaggaagagggcaagaagccggcttccggcaacccggtg
ctcctcggcatcaccaaggcctcgctgcagacgccgagcttcatctcggcggcgtcgttc
caggaaaccacgcgcgtcctcacggaagccgcggtggccggcaagaccgacacgctgcag
ggcctgaaggagaacgtcatcgtcggccgcctcatcccggccggcacgggcggcatgatg
acccaggtccgccggatcgcctcctcgcgcgacgacctcattctcgaggatcgccgcacg
gccgccaacacgcaggagagcgatcgcctgctgaccaacctcggcgctgccgagtag
DBGET
integrated database retrieval system
