KEGG   Antarcticirhabdus aurantiaca: OXU80_12200
Entry
OXU80_12200       CDS       T09604                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
jav  Antarcticirhabdus aurantiaca
Pathway
jav02024  Quorum sensing
jav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OXU80_12200 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    OXU80_12200 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jav03019]
    OXU80_12200 (hfq)
   03036 Chromosome and associated proteins [BR:jav03036]
    OXU80_12200 (hfq)
Messenger RNA biogenesis [BR:jav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     OXU80_12200 (hfq)
Chromosome and associated proteins [BR:jav03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    OXU80_12200 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: WAJ30913
LinkDB
Position
2518030..2518278
AA seq 82 aa
MAERSQNLQDLFLNTVRKQKISLTIFLVNGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHA
ISTIMPSQPVNMQDSGEEDRKS
NT seq 249 nt   +upstreamnt  +downstreamnt
atggccgaacggtcgcaaaatcttcaggatctcttcctcaatacggtacgcaagcagaag
atctcgctgacgatctttctcgtcaacggtgtgaagctgaccggcgtcgtaacgtcgttt
gacaatttttgtgtcctgcttcgacgcgatgggcactcgcaactcgtctacaagcacgcc
atatctacgatcatgccgtcgcagcccgtgaacatgcaggactcgggcgaggaagacagg
aagagctga

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