Antarcticirhabdus aurantiaca: OXU80_12325
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Entry
OXU80_12325 CDS
T09604
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jav
Antarcticirhabdus aurantiaca
Pathway
jav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OXU80_12325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jav03400
]
OXU80_12325 (mfd)
Enzymes [BR:
jav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OXU80_12325 (mfd)
DNA repair and recombination proteins [BR:
jav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OXU80_12325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WAJ30934
LinkDB
All DBs
Position
complement(2540989..2544498)
Genome browser
AA seq
1169 aa
AA seq
DB search
MSLTEPLKKALERGAGLSIGNVLDGYEPFLIAEIARLRGGKKPVVFVMRDGNGIADLEDA
LRFVAPELPVLTLPAWDCLPYDRVGPSSEVAARRLAAMSALVALKKEPHRAVVLTTANAM
LQRMPPASMLAEESISARAGNRIAMDDIVRVLGRGGFERVATVRERGEFAVRGGILDLWA
PGEAEPVRLDFFGDTLESIRSFDPASQRTIAQKKSFDLAPVSEIAIRDETISRFRQNYLR
RFGAAQRNDALYAAISEGRRFSGMEHWLPLFYETTDTLFDYVEGMPVVLDHLVAEAVGER
RKTVVDHFEARTRAPKEASGDAVPYNPVEPDDLYLSEGDLAAWLAIVDPIRLSAYGITDA
GGRDTFNLDVERGRNFAAERATSDANVFNAAVYHIGRLRASGKRVILAAWTEGSRERLAE
VVKEHGLEGLKPVENLKQANETPKNLVATAVLGIEAGFETDRLAVVAEQDILGDRLVRRG
RRKRKGSDFISEVSGLDEGDIVVHVDHGIGRFVGLRTIEAAGAPHDCLELHYANDNRLFL
PVENIELLSRYGGEGSEAVLDKLGGGAWQARKAKLKKRLLDMAGGLIRIAAERQMRPAPR
LVPPEGLWGEFAARFPYEETEDQQNAIDAVADDLGMGRPMDRLVCGDVGFGKTEVALRAA
FIAAMNGLQVAVVVPTTLLARQHFKTFAERFRGLPLNVAQASRLVTTKELAETKKGLTAG
QVDIVVGTHALLGKGVTFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRT
LQLALTGVRELSLITTPPVDRMAVRTFVTPFDPLVVRETLLRERYRGGQSFYVAPRLADL
AGIREFLETHVPELKVAVAHGQMAAGELDDIMNAFYEGQYDVLLSTTIVESGLDIPSANT
MIVHRADMFGLAQLYQLRGRVGRSKLRAYALMTIPANKTPTKGADRRLKVLQSLDTLGAG
FQLASHDLDQRGAGNLLGDEQSGHIKEVGFELYQQMLEEAVAEMKGEAVETDGHWSPQIT
LGTAVMIPESYIPDLQLRMGLYRRLAELENAREIDAFGAELIDRFGPMPTEVEHLLKVVF
IKSLCRKANIEKLDAGPKGIVIQFREKNFADPAALVRFISEQGSSAKIRPDQSIVLVRDW
ATPEKRLNGSAAVATQLARFVDEMQKKAA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccgaaccgttgaagaaggcgctggagcgcggcgccgggctgtcgatcggc
aacgtcctcgacggctacgagcccttcctgatcgccgagatcgcgcgcctgcgcggcggc
aagaagcccgtcgtcttcgtcatgcgcgacggcaacggcatcgccgacctcgaggacgcg
ctgcgattcgtcgcgcccgaacttcccgtcctgacgctgccggcctgggactgcctgccc
tacgaccgcgtcggcccgtcctctgaggtcgcggcgcggcgcctggccgccatgagcgcc
ctcgtcgcgctgaagaaggagccgcaccgggcggtcgtgctgaccaccgccaacgccatg
ctccagcgcatgccgccagcctcgatgctggcggaggagtcgatctcggcgcgcgcgggc
aaccgcatcgccatggacgacatcgtgcgcgtgctcggccgcggcggtttcgagcgcgtc
gcgacggtgcgcgagcgcggcgagttcgccgtgcgcggcggcatcctcgacctctgggcg
ccgggcgaagccgagcccgtgcgcctcgacttcttcggcgacacgctggaatcgatccgc
tccttcgatcccgcgagccagcgcacgatcgcgcagaagaagagcttcgacctcgcgccg
gtgtccgagatcgcgatccgcgacgagacgatcagccgcttccgccagaactatctgcgc
cgcttcggtgctgcgcagcgcaacgatgctctctatgcagcgatctcggaggggcgccgc
ttctccgggatggagcactggctgccactgttctacgagacgaccgacacgctgttcgac
tacgtcgagggcatgcccgtcgtcctcgaccatctcgtcgccgaggcggtgggcgagcgg
cgcaagaccgtcgtcgaccatttcgaggcccgcacccgcgcgccgaaggaggcctcgggc
gacgcggtgccctacaatccggtcgagccggacgacctctacctgtccgaaggcgacctc
gcggcctggctcgccatcgtcgatccgatccgcctgtccgcctatggcatcaccgatgcc
ggcgggcgcgacaccttcaacctcgacgtcgaacgcggccgcaacttcgcggccgagcgc
gcgacgagcgacgccaacgtcttcaacgcggcggtgtatcacatcggccgccttcgcgcg
agcggcaagcgcgtcatcctcgcggcctggacggagggctcgcgcgagcgcctcgccgaa
gtcgtcaaggagcacgggctcgaagggctgaagccggtcgagaacctgaagcaggcgaac
gagacgcccaagaacctcgtcgcgaccgccgttctcggcatcgaggcgggcttcgagacg
gatcggctggcggtcgtcgccgagcaggacatcctcggcgaccggctggtgcggcgcggg
cggcgcaagcgcaagggctcggacttcatctcggaggtttcgggcctcgacgaaggcgac
atcgtcgtccacgtcgaccacggcatcgggcgcttcgtgggcctgcgcaccatcgaggcg
gcgggggcgccgcacgactgcctggagctgcactacgccaacgacaaccggctgttcctg
ccggtcgagaacatcgaactcctgtcgcgctacggcggcgagggctcggaggcggtgctc
gacaagctcggcggcggtgcctggcaggcgcgcaaggccaagctgaagaagcggctgctc
gacatggccggcgggctcatccgcatcgccgccgagcggcagatgcgccccgcaccgcgc
ctcgtgccgccggaagggctctggggcgagttcgccgcgcgcttcccttacgaggaaacc
gaggaccagcagaacgccatcgacgccgtcgccgacgacctcggcatgggccggccgatg
gaccggctggtctgcggcgacgtcggcttcggcaagacggaggtcgcgctgcgcgccgcc
ttcatcgcggcgatgaacgggttgcaggtcgccgtggtcgttccgacgacgttgctcgcg
cgccagcacttcaagaccttcgccgagcgcttccgcggcctgccgctcaacgtcgcgcag
gcctcgcggctggtgacgacgaaggagttggccgaaacgaagaagggcctgacggccgga
caggtcgacatcgtggtcggcacccacgcgctgctcggcaagggcgtgaccttcaagaac
ctcggcctcctgatcatcgacgaagagcagcacttcggcgtgaagcacaaggagcggctg
aaggagctgaagtcggatgtccacgtcctgacgctctcggcaacgccgatcccgcgcacg
ctccagctggcgctgactggcgttcgcgagctgtcgctcatcaccacgccgcctgtggat
cgcatggcggtgcgcaccttcgtcacgcccttcgacccgctggtggtgcgcgagacgctc
ctgcgcgagcgctatcgcggcgggcagagcttctacgtcgcaccgcgcctcgcggatctc
gcgggcattcgcgagttcctggagacgcacgtgcccgagctgaaggtcgccgtcgcccac
gggcagatggcggcgggcgagctcgacgacatcatgaacgccttctacgaggggcagtat
gacgtgctgctttcgacgacgatcgtggagtcgggtctcgacatcccctcggccaacacg
atgatcgtccaccgcgccgacatgttcggcctcgcgcagctctaccagctgcgcggacgc
gtcggacgctcgaagctgcgcgcctacgcgctgatgaccatccccgccaacaagacgccg
accaagggcgccgaccggcggctgaaggtgcttcagtcgctcgacacgctcggcgctggc
ttccagctggcgagccacgacctcgaccagcgcggcgcgggcaatctcctcggcgacgag
cagtccggccacatcaaggaagtcggcttcgaactctaccagcagatgctggaggaggcg
gtggccgaaatgaagggcgaggcggtggaaacggacggccactggtcgccgcagatcacg
ctcggcacggccgtcatgatcccggaaagctacatcccggacctgcagctgcgcatgggc
ctctaccggcgcttggcggagctggagaatgcccgcgagatcgacgccttcggcgccgag
ctgatcgaccgcttcggaccgatgccgacggaggtcgagcatctcctgaaggtggtcttc
atcaagtcgctgtgccgcaaggcgaacatcgagaagctggacgccggcccgaagggcatc
gtcatccagttccgtgagaagaacttcgccgacccggcggcgctcgtgcgcttcatctcg
gagcagggctccagcgccaagatccggcccgaccagtcgatcgtcctcgtgcgcgactgg
gcaaccccggagaagcggctcaacggttcggcggcggtggcgacgcaactcgcccgcttc
gtcgacgagatgcagaagaaggctgcctga
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