Antarcticirhabdus aurantiaca: OXU80_15050
Help
Entry
OXU80_15050 CDS
T09604
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
jav
Antarcticirhabdus aurantiaca
Pathway
jav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OXU80_15050 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jav03021
]
OXU80_15050 (rpoD)
Transcription machinery [BR:
jav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OXU80_15050 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
DUF6591
Motif
Other DBs
NCBI-ProteinID:
WAJ26224
LinkDB
All DBs
Position
complement(3106720..3108705)
Genome browser
AA seq
661 aa
AA seq
DB search
MATKVKESEAPVEERPDGAPDSPLLDLSDDAVKKMIKAAKKRGFVTMDKLNSMLSADDVT
SEQIEDMMAMLNDMGINVVEDEEGEEEEKEESASESTELAETGSTQVATTQKREAGDRTD
DPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEGN
IMLREIVDLEATYAGPEAKVPGPGIDGENAENRTEAETGMKLPGEGGEDDDDEDDIENSM
SLAAMEAEIRPQVMETFDLIADSYKRLRKLQDQQVESRLAAAGALSSAQERSYKKLKEDL
VAAVKSLSLNQNRIDALVAQLYDINKRLVGNEGKLLRLAESYGVKRDEFLREYQGSELDP
NWTRHIANLSGKGWLKFVQNGKDNIRNLRQEIQNLATETGLEIIEFRRIVNMVKKGESEA
RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLE
KVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAILPIDAAIQANLRETTTRVLASLT
PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggtcaaggaaagcgaagcgccggtcgaggagcgtccggatggcgccccc
gacagccctcttctcgatctctccgatgatgccgtcaagaagatgatcaaggccgcgaag
aagcgcggcttcgtcacgatggacaagctgaactcgatgctctcggcggacgacgtcacg
tccgagcagatcgaggacatgatggccatgctcaacgacatgggcatcaacgtcgtcgag
gacgaggaaggcgaggaggaggagaaggaagagtccgcctccgaatcgaccgagctcgcc
gagaccggctcgacgcaggtcgccaccacccagaagcgcgaggcgggcgaccgcaccgac
gaccccgtccgcatgtacctgcgcgagatgggctcggtcgagctcctgtcgcgcgaaggc
gagatcgccatcgccaagcggatcgaggccggccgcgagacgatgatcgccggcctgtgc
gagagcccgctgaccttccaggccatcatcatctggcgcgacgaactcaacgaaggcaac
atcatgcttcgggagatcgtcgatctcgaagcgacctatgccggccccgaggccaaggtg
ccgggccccggcatcgacggtgaaaacgccgagaaccgcaccgaagcggagaccggcatg
aagctgccgggcgagggcggcgaggacgacgacgacgaggacgacatcgagaactcgatg
tcgctggccgccatggaggcggaaatccggccgcaggtcatggagaccttcgacctgatc
gccgactcctacaagcggctgcgcaagctccaggaccagcaggtcgagtcgcggctcgcc
gccgccggcgccctgtcctcggctcaggagcgctcgtacaagaagctgaaggaagacctc
gtcgccgcggtgaagagcctctcgctcaaccagaaccgcatcgacgccctggtcgcgcag
ctctacgacatcaacaagcgcctcgtcggcaacgagggcaagcttctgcgcctcgccgaa
agctacggcgtcaagcgcgacgagttcctgcgcgagtaccagggctccgagctcgatccg
aactggacgcgccacatcgcgaacctgtcgggcaagggctggctgaagttcgtccagaac
ggcaaggacaacatccggaacctccgccaggagatccagaacctcgccaccgagaccggc
ctcgagatcatcgagttccgccgcatcgtgaacatggtcaagaagggcgaatccgaggcc
cggcaggccaagaaggagatggtcgaggcgaacctgcgcctcgtgatctccatcgccaag
aagtacacgaaccgcggcctgcagttcctggacctcatccaggagggcaacatcggcctg
atgaaggccgtggacaagttcgagtaccgccgcggctacaagttctcgacctacgcgacg
tggtggatccggcaggccatcacccgctcgatcgccgaccaggcgcggaccatccgcatc
ccggtccacatgatcgagacgatcaacaagatcgtgcgcacctcgcgccagatgctccac
gagatcggccgcgagccgaccccggaggagctggccgagaagctggcgatgccgctggag
aaggtccgcaaggtcctcaagatcgccaaggagccgatctcgctcgaaacccccgtgggc
gacgaggaggacagccacctcggcgacttcatcgaggacaagaacgcgatcctgccgatc
gacgcggcgatccaggcgaacctgcgcgagaccacgacgcgggtgctggcttcgctcacg
ccccgcgaggagcgcgtccttcgcatgcgcttcggcatcggcatgaacaccgaccatacc
ctcgaagaggtcggccagcagttctcggtgacccgcgagcgcatccgtcagatcgaggcc
aaggcgctgcgcaagctcaagcacccgagccgctcgcgcaagctgcgctcgttcctcgac
agctga
DBGET
integrated database retrieval system
