Antarcticirhabdus aurantiaca: OXU80_16725
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Entry
OXU80_16725 CDS
T09604
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
jav
Antarcticirhabdus aurantiaca
Pathway
jav03030
DNA replication
jav03430
Mismatch repair
jav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OXU80_16725
03430 Mismatch repair
OXU80_16725
03440 Homologous recombination
OXU80_16725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jav03032
]
OXU80_16725
03400 DNA repair and recombination proteins [BR:
jav03400
]
OXU80_16725
Enzymes [BR:
jav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OXU80_16725
DNA replication proteins [BR:
jav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OXU80_16725
DNA repair and recombination proteins [BR:
jav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OXU80_16725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
SWIM
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
WAJ26516
LinkDB
All DBs
Position
complement(3452488..3453390)
Genome browser
AA seq
300 aa
AA seq
DB search
MRTVAIDFETANARPDSACAVGFAWIEGDRIVRREHHLIRPREMRFDAGNIRVHGIHPEH
VEDAPEFDAVMADFVAAMGDALLVAHNASFDMRVLEASARAYRMALPRHASLCTVALGRR
LWPDATNHKLSTLAHRCGVSFRHHHAGEDAFACATIALTGMAEEGASSVRDLAARTGLAR
ARTGVVALRAGGIAERALGGLRPELRPASARPVAAATPKPAAPGERRRFTVSGSAGTAYD
VVLTREPTGWRSRCTCMSARFRPVCKHAAALMAGDFRAVVAENRPEGAAEIRVFPLAEIG
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgcggacggtcgcgatcgacttcgagacggcgaacgcccggcccgacagcgcctgcgcg
gtcggcttcgcctggatcgagggcgaccgcatcgtgcgacgcgagcaccacctgatccgc
ccgcgcgagatgcgcttcgacgccggcaacatccgggtccacggcatccatcccgagcat
gtcgaggacgcgccggagttcgacgcggtcatggccgacttcgtggccgcgatgggcgac
gcgctcctcgtcgcgcacaacgcgtccttcgacatgcgcgtcctcgaagcgagcgcgcgg
gcctatcgcatggcgctgccgcggcatgcgagcctctgcaccgtcgcgctcggccgccgg
ctgtggccggacgcgaccaaccacaagctctcgacgctggcgcaccgctgcggcgtcagc
ttccgccaccaccatgcgggcgaggacgccttcgcctgcgcgacgatcgcgctgacgggc
atggcggaggagggcgcgtcgagcgtccgcgacctcgccgcgcgaaccgggctcgcccgt
gcccgcaccggcgtcgttgcgctgcgcgccgggggcatcgccgagcgggctctcggcggt
cttcggcccgagctgcggccggcgtccgcgcggcccgtcgctgcggccaccccgaagccc
gccgcacccggcgagcgacgccgcttcacggtgtcgggcagcgccggcacggcctacgac
gtggtgctcacgcgcgagcccaccggctggcggtcgcgctgcacctgcatgagcgcccgt
ttccgccccgtctgcaagcacgccgccgcgctcatggccggcgacttccgcgcggtcgtc
gccgagaacagacccgagggggctgcggaaatccgggtgttcccgctcgccgagatcggc
tag
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