KEGG   Antarcticirhabdus aurantiaca: OXU80_18990
Entry
OXU80_18990       CDS       T09604                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
jav  Antarcticirhabdus aurantiaca
Pathway
jav02020  Two-component system
Brite
KEGG Orthology (KO) [BR:jav00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    OXU80_18990
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:jav02022]
    OXU80_18990
Two-component system [BR:jav02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   OXU80_18990
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_2 HTH_50 TadZ_N AAA_16 AAA_7 AAA_22 AAA DUF6716 AAA_3 HTH_23 HTH_28
Other DBs
NCBI-ProteinID: WAJ26935
LinkDB
Position
3917639..3919051
AA seq 470 aa
MSGGDDRSAFVILVDDEKDVRLSYAQSLDLAGFAVRAFASAEGALDLVGHSFAGVVVSDI
RMAGMDGMTLLGRVRAIDPDIPVILVTGHADTPLAVSAMRDGAYDFIEKPCSAQHLADVV
VRAMDRRRLVLENRRLRALADGRRDSIEARLQGRVPTMVDLRYRIRALANAAADVLVIGD
TGTGKEVVARTLHDVSDRASRPFVVVDCAALPTSLAESELFGHEAGVFPGAARARFGKFE
QAHGGTVLLDEIAALPLDLQARLLRVIQDRTVTRIGAHAPVSIDVRFIATSKTEPEADVA
AGGLRADLFYRLGVATLRVPPLSQRREDVPLLFLQLVSEAAARLGREEPAVPQTVVADIA
RRPWPGNLRELRNAAERYVLGLGIAPLTGGESEAAGGARLADRVADYERSLIAGALALSG
GSLKSVYEQLGISRKTLYEKMQKYGLDKRDYGFGADDPEDASAADPATAP
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgagcggcggcgacgatcgatcggccttcgtcatcctcgtcgacgacgagaaggacgtg
cgcctgtcctacgcgcagtcgctcgacctggcgggcttcgcggtccgggccttcgccagc
gccgagggcgcgctcgacctcgtcggccacagcttcgccggcgtcgtcgtctccgacatc
cgcatggccggcatggacgggatgacgctgctcggacgcgtgcgcgccatcgatcccgac
attcccgtgatcctcgtcacgggacacgccgacacgccgctcgccgtatcggccatgcgc
gatggcgcctacgacttcatcgagaagccctgctcggcccagcacctcgccgacgtcgtc
gtccgggcgatggaccgccgccgtctcgtcctggagaaccgccgcctgcgcgcgctggcg
gacggccggcgcgacagcatcgaggcgcgcctccagggccgcgtgccgaccatggtggac
ctgcgctaccgcatccgggcgctcgccaatgccgcggccgacgtcctcgtcatcggcgac
acgggcacgggcaaggaggtcgtggcgcgcacgctccacgacgtcagcgaccgggcgagc
cggcccttcgtcgtggtcgattgcgcggcgctgccgacgagcctcgcggagagcgagctc
ttcggccacgaggcgggggtgtttccgggcgccgcccgggcgcgcttcggaaagttcgag
caggcccacggcggcaccgtgcttctcgacgagatcgccgcgctgcccctcgacctgcag
gcgcggctcctgcgcgtcatccaggatcggacggtgacgcgcatcggcgcccacgcgccg
gtctccatcgacgtgcgcttcatcgcgacgtccaagaccgagccggaggccgacgtcgcg
gccggagggctgcgcgccgacctcttctatcgcctgggcgtcgcgacgctgcgcgtgccc
ccgctctcgcagcgccgcgaggacgtgccgctcctcttcctccagcttgtgtcggaagct
gccgcgcggctcgggcgggaggagccggccgtgccgcagaccgtcgtcgcggacatcgcg
cgccgaccctggccgggcaatctgcgcgaactgcgcaacgccgcggaacgctacgtgctc
ggcctcggcatcgcgccgctgaccggcggcgaaagcgaggccgccggcggcgcgcggctc
gccgaccgcgtggccgattacgagcgctcgctgatcgcgggcgcgctcgcactgtccggc
ggcagcctcaaatccgtctacgagcagctcggcatctcccgcaagaccctctacgagaag
atgcagaagtacgggctcgacaagcgcgactacggcttcggcgccgacgaccccgaggac
gcgtcggccgcggatccggcgacggctccctga

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