Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_03270
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Entry
YQ44_03270 CDS
T04539
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jaz
Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YQ44_03270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jaz03019
]
YQ44_03270
Enzymes [BR:
jaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YQ44_03270
Messenger RNA biogenesis [BR:
jaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YQ44_03270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APA67002
LinkDB
All DBs
Position
739006..740559
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AA seq
517 aa
AA seq
DB search
MSETESTPTPSPAIANDAAPAATTAPVAPPAPIAAPTVSFADFGLAPEILRALTEQGYTH
PTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLLAHASSSMSPARHPVRALIL
TPTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQTVILRGGVEIVIATPGRLLDHIE
QKNISLSQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATF
LNDPLTIEVARSNQTADKVTQVVYKVPEDQKHALVAHLLRQRDLKQVIVFSNTKIGASRL
ARVLEQEGMSATAIHGDKSQQERMAALEAFKKGEIDVLVATDVAARGLDISDLPCVINFD
LPYNAEDYVHRIGRTGRAGASGDAISIYSDKDERLLTDIEKLIKQSIKRGELAGFSPAPA
RGSDGERRPPRRSEGGEGRLARPADSRHGSESRDSRPAERSARPAFGPGARREKTDPWFL
KPYEPAKAAAPAASSMAPVAAKPKQKVAALLGGLLKQ
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccgaatcgactcctacgcccagcccggcgatcgccaatgacgcggcgcct
gccgccacgacggcacctgtagcacctcctgcccccattgctgcccctaccgtgagtttt
gccgattttggcctggccccggagatcctgcgcgcgctgaccgagcagggctacacccat
ccgacaccgatccaggaacaggcgatccccgtggtcctgcagggccgcgacgtgatgggc
gccgcgcagacgggtacgggcaagacggccggcttttcgctgccgatcatccagctgctg
ctggcccatgccagcagcagcatgtcgcccgcgcgtcatccggtgcgcgcgctgatcctg
acgccgacccgcgaactggcggtgcaggtggcggaaaacgtcaaggcttacgccaagcac
acgccgctgcgctcgaccgtcgtcttcggcggcatggacatgaagccgcaaaccgtcatc
ctgcgcggtggcgtggaaatcgtcatcgccacgccgggtcgcctgcttgaccatatcgag
caaaagaacatcagcctgagccaggtgcagatgctggtcatggatgaggcagaccgcatg
ctggacatgggtttcttgcctgacttgcaacgcatcatcaacttgctgccaaaacaacgc
cagaacctgatgttctcggccacgttctcgccggaaatcaagaagctggccgcgaccttc
ctcaacgatccgctgacgatcgaagtggcgcgcagcaaccagacggccgacaaggtcacg
caagtggtctacaaggtgccggaagaccagaagcatgcgctggtggcccatctgttgcgc
cagcgcgacttgaagcaggtcatcgtgttttcgaacaccaagatcggcgcctcgcgcctg
gcccgcgtgctggagcaggaaggcatgagcgccacggcgattcacggtgacaagagccag
caggagcgcatggcggcgctggaagcgttcaagaagggcgaaatcgacgtgctggtcgct
accgatgtggccgcgcgcggcctcgatatttccgatctgccttgtgtcatcaacttcgac
ttgccttacaacgctgaagattatgtgcaccgcatcggccgtacgggacgtgctggcgcc
tcgggcgacgccatttcgatctattcggacaaggatgagcgcctgctgacggatatcgaa
aaactgatcaagcaaagcatcaagcgcggtgagctggccggtttctcgcccgcccctgcg
cgcggcagcgatggcgaacgccgtccgccgcgccgcagcgaaggcggcgagggacgcctt
gcgcgtccggccgatagccgtcatggcagtgagagccgcgacagccggccggccgaacgg
agtgcccgtcctgcctttggccccggcgcccgccgcgaaaagaccgatccgtggttcctc
aagccgtatgagcctgccaaggctgcggcgccggctgccagcagcatggcgccggtggcg
gccaagccaaagcagaaggtggcggctttgctgggtgggttgctgaagcagtaa
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