Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_04495
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Entry
YQ44_04495 CDS
T04539
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jaz
Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YQ44_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jaz03019
]
YQ44_04495
03009 Ribosome biogenesis [BR:
jaz03009
]
YQ44_04495
Enzymes [BR:
jaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
YQ44_04495
Messenger RNA biogenesis [BR:
jaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YQ44_04495
Ribosome biogenesis [BR:
jaz03009
]
Prokaryotic type
rRNA processing factors
YQ44_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
APA67210
UniProt:
A0A1I9XTW8
LinkDB
All DBs
Position
complement(1025513..1028698)
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARTYFREGVDVRNASVKEALREGQEIMVQVEKEERGNKGAALTSFVS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPAGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGKSANGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYDQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSATIHVQVPVDVGAFLLNEKRGEVLKIENRHRIAVILIPNKHLETPH
YKLERIKHDDPRLEDSQASYNLAEHAETDMAYSKRQKEEAKPRQEAVVKTITPDQPAPLV
ERKPVEAKPTPVAAPAAPQGLIAKIISFFTGAPAPVAPAPAPVAPAKPAGADRGDRNSRG
PRGRGRNGKPGREEREPGQGRPAQDDAAKEAEALEKAARPPRPPRPPREPREARENGDTA
AAPRERGERPERAERPERAERPERAERPPRQPREAREPRADKAVVAEVKAEELALVGAAA
SAINVVVPSNGPESDAAPANLLKAPANAGPEGEETENDVEGEEPRRRRRRGGRNRNRRDR
ETGELIESANGENEGQDAPVISFTVAPANETDAAPVAVVAAATAVVAVAAPVEAAVDAPA
VVVEVVEVAKVVEIAKAEAAAPAADVAEAVPAAEVAEVAAPAAVIVPEAPAEAVVAAAQA
VPAAAEPAPAAEYSFAEKAEAAPAPAPAPAEIIVEAVPVVETAPLAEAIAVIEEAPVAEA
APAAVVAEAAPAVVEAAPVVAEAAPAPAPTPAPAAPVAAPLDLNAVLGSAGLTLAATDPE
KLRLAQEAAAKAVAPVRKPRERKPLPPQSDEPLIQVNTQRP
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgccacgcagcaagaagaactgcgcgtagcgattgtcgac
ggacaaaaactgatcgacatcgatatcgagacagccgggcgcgaacagcgcaaatccaac
atctacaagggcgtgatcacgcgcatcgagccatcgctcgaagcctgcttcgtcagctat
ggcgaagaccgccacggcttcctgcctttcaaggaagttgcccgcacgtacttccgcgaa
ggcgtggacgtgcgcaatgcctccgtcaaggaagcgctgcgcgaaggccaggaaatcatg
gtccaggtggaaaaagaagaacgcggcaacaagggcgccgccctgacctcgttcgtttcg
ctggccggccgttacctggtattgatgccgaacaacccgcgtggcggtggcgtatcgcgc
cgcgtggaaggcgaagagcgccaggaattgcgcgaaaccatggataaactggacttgcca
gctggcatgtccgtgatcgcccgcaccgccggcatcggccgcaacgtcgatgaactgcag
tgggacttgaattacctgatgcaactgtggcgcgccatcgaaggcgccggcaagtcggcc
aacggcgccttcctgatctaccaggaatcgtcgctcgtcatccgcgccatccgcgactac
ttccagcccgacatcggcgagatcctgatcgacaccgacgagatctacgaccaggcgcac
cagttcatgagccacgtgatgcccgacatggtgcaccgcgtaaaacgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaaacggcctacagccgcacc
gtgccgctgccatcgggcggcgccatcgtcatcgaccacacggaagccctggtctccgtc
gacgtcaactcggcccgcgccacgcgcggctcggacatcgagaccaccgccttcaacacc
aactgcgaagcggccgaagaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagtggcgaagaaccagcgcgaagtggaacagcgc
ctgaaagatgcgctgcaccatgaccgtgcccgcgtgcaaatgggcaagatttcgcgtttc
ggcctgatggaactgtcgcgccagcgcctgcgtccttcgctgtccgaaggttcgcacgtg
acgtgcccgcgctgctccggcaccggccacatccgcgatacggaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaactcggccaccatccacgtgcaa
gtgcccgtcgacgtgggcgccttcctgctcaacgaaaagcgcggcgaagtgctgaagatc
gagaaccgccaccgcatcgccgtgatcctgatcccgaacaagcatctggaaacgccgcac
tacaagctggaacgcatcaagcacgacgatccgcgtctggaagacagccaggccagctac
aacctggccgaacacgctgaaaccgacatggcttacagcaagcgccagaaggaagaagcc
aagccgcgccaggaagccgtcgtcaagacgatcacgcctgaccagccggcaccgctggtc
gagcgcaagcccgtcgaagcgaaaccaactccggtggccgcgcctgccgcgccgcaaggc
ctgatcgccaagatcatcagcttcttcaccggcgccccggcaccggtggcgccagcgcca
gcccctgtcgccccggccaagccggccggcgccgaccgcggcgaccgcaacagccgtggc
ccgcgtggccgtggccgcaacggcaagccgggccgcgaagaacgcgaaccgggccagggc
cgtccagcccaggacgacgccgcgaaagaagcggaagcactggaaaaagcggcacgtccg
ccacgcccgccacgtccgccacgcgaaccgcgtgaagcgcgcgagaatggcgacacggca
gcggcaccgcgcgaacgcggcgaacgtcctgaacgcgccgagcgtccggaacgtgccgag
cgcccggagcgcgccgaacgtccgccacgccagccacgcgaagcgcgcgaaccgcgcgcc
gacaaggctgttgttgctgaagtgaaagctgaagagctggcattggtcggtgctgccgcc
agcgccatcaacgtggtcgtgccgtcaaacggccccgagtccgacgccgcaccggcgaac
ttgctgaaagcgccggcgaacgccggtcctgaaggcgaagagacggaaaacgacgtcgaa
ggcgaagaaccgcgccgccgccgccgtcgtggtggccgcaaccgcaaccgccgcgaccgt
gaaacgggcgagctgatcgaatcggcaaacggcgagaacgaaggccaggatgccccggtg
atcagctttaccgtggcgccagccaacgaaaccgacgctgctccggtcgccgtggtagct
gccgctaccgccgtcgtcgccgttgccgcgccagtggaagctgccgttgatgcgccagcc
gtcgtggtggaagtggtggaagtggccaaggtcgtggaaatcgccaaggcagaagcagca
gcgcctgccgctgacgttgccgaagcggttcctgctgctgaagtggctgaagtggccgcc
cctgccgccgtgatcgtgccggaagcaccagccgaggccgtcgttgctgcagcgcaagct
gtaccagccgctgccgagcctgctcctgccgccgagtacagctttgccgagaaggccgag
gctgctccggctccggctccggctccagcggaaatcatcgtggaagccgtgcctgtcgtg
gaaacggcaccgctggctgaagcgatcgccgtgatcgaagaagcgccagtcgccgaagcg
gcgcctgccgctgtcgtggcagaagcggccccggccgtggtagaagccgcgcccgtggtt
gccgaagctgcgccagcgcctgcaccaaccccagcgcctgccgcgccagtggccgcgccg
ctggacttgaacgcggtgctcggttcggccggcctgaccctggccgccaccgatccggaa
aagctgcgcctggcacaggaagctgccgccaaggccgtcgcgcccgtgcgcaagccacgc
gaacgcaagccattgccgccgcaatcggatgagccgttgatccaggtcaacacgcagcgt
ccataa
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