KEGG   Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_13605
Entry
YQ44_13605        CDS       T04539                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
jaz  Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz02020  Two-component system
Brite
KEGG Orthology (KO) [BR:jaz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    YQ44_13605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jaz03021]
    YQ44_13605
Transcription machinery [BR:jaz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     YQ44_13605
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 HTH_7 Sigma70_ECF HTH_38 HTH_11 HTH_Tnp_ISL3
Other DBs
NCBI-ProteinID: APA68669
UniProt: A0A1I9XY27
LinkDB
Position
complement(3121987..3122499)
AA seq 170 aa
MSAAQSGVHQEVGGLYHDHHRWLQGWLRHKLGNAFDAADVAHDTFMRLLSRDDAIGAREP
RAFLTTVAKGVLGNLYRRRDLEAAYLETLASLPAQCAPDPEAQAILLEALCDIDRRLDGL
APPVRRAFLLSQLDGMPQAAIALELDVSLATVQRYLVKAMHQCFFSHPAP
NT seq 513 nt   +upstreamnt  +downstreamnt
gtgtcggctgcccaatccggcgtccaccaggaggtgggcggcctgtatcacgaccaccac
cgctggctgcagggctggctgcggcacaagctgggcaacgccttcgacgcggccgacgtg
gcgcacgataccttcatgcgcttgctgagccgcgatgacgccatcggcgcgcgcgagccg
cgcgccttcctgacgaccgtggccaagggcgtgctgggcaatctgtaccggcggcgcgac
ctggaggcggcctacctggaaaccctggccagcctgccggcgcagtgcgcgcccgatccc
gaggcgcaagccatcctgctcgaagccctgtgcgatatcgaccgccgcctcgacggcctg
gcgccgcccgtgcgccgcgcctttctgctgtcgcagctcgacggcatgccgcaggcggcc
atcgcgctggagctggacgtctcgctggccaccgtgcagcgctacctggtgaaagccatg
caccagtgcttcttttcccatccggcgccgtga

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