Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_13605
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Entry
YQ44_13605 CDS
T04539
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
jaz
Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
jaz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
YQ44_13605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jaz03021
]
YQ44_13605
Transcription machinery [BR:
jaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YQ44_13605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
HTH_7
Sigma70_ECF
HTH_38
HTH_11
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
APA68669
UniProt:
A0A1I9XY27
LinkDB
All DBs
Position
complement(3121987..3122499)
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AA seq
170 aa
AA seq
DB search
MSAAQSGVHQEVGGLYHDHHRWLQGWLRHKLGNAFDAADVAHDTFMRLLSRDDAIGAREP
RAFLTTVAKGVLGNLYRRRDLEAAYLETLASLPAQCAPDPEAQAILLEALCDIDRRLDGL
APPVRRAFLLSQLDGMPQAAIALELDVSLATVQRYLVKAMHQCFFSHPAP
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggctgcccaatccggcgtccaccaggaggtgggcggcctgtatcacgaccaccac
cgctggctgcagggctggctgcggcacaagctgggcaacgccttcgacgcggccgacgtg
gcgcacgataccttcatgcgcttgctgagccgcgatgacgccatcggcgcgcgcgagccg
cgcgccttcctgacgaccgtggccaagggcgtgctgggcaatctgtaccggcggcgcgac
ctggaggcggcctacctggaaaccctggccagcctgccggcgcagtgcgcgcccgatccc
gaggcgcaagccatcctgctcgaagccctgtgcgatatcgaccgccgcctcgacggcctg
gcgccgcccgtgcgccgcgcctttctgctgtcgcagctcgacggcatgccgcaggcggcc
atcgcgctggagctggacgtctcgctggccaccgtgcagcgctacctggtgaaagccatg
caccagtgcttcttttcccatccggcgccgtga
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