Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_16985
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Entry
YQ44_16985 CDS
T04539
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
jaz
Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YQ44_16985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jaz03019
]
YQ44_16985
03016 Transfer RNA biogenesis [BR:
jaz03016
]
YQ44_16985
Enzymes [BR:
jaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
YQ44_16985
Messenger RNA biogenesis [BR:
jaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YQ44_16985
Transfer RNA biogenesis [BR:
jaz03016
]
Prokaryotic type
tRNA degradation factors
YQ44_16985
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
APA69197
LinkDB
All DBs
Position
complement(3931042..3933579)
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AA seq
845 aa
AA seq
DB search
MSQNTHTIPSREDILGIFRSVNAPLDPQSLGKTLQVHADSMDVLVRRLKAMERDGQLKSD
AGGVFALADQSALVAGRVTSHRDGFGFVIPDDASADLFLPEKEMQKVLHGDKVMARIVGT
DRRGRPEGTIVEVTQRANTHVIGRLIQENGTWVVAPEDQRIGQDILVTGSLGKAKAGQIV
SVELTEQPMRFKQPVGKIVEVLGALDDPGMEIEIAVRKFNVPHIFSAAALKQAEKLPFEV
RAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRANCFRLIVAIADVSHYVKPN
DALDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPAVDRLTLVCDAVVSDKGELKAYQ
FYPAVIHSAARLTYDEVAAVLGNTKGPEAARRADILPHLQNLEAVYRALLKARTERGAID
FETTETYIVCNSAGKIEKIIPRTRNEAHKIIEECMLAANVCAADLLLRNKHPGTYRIHAS
PTKEKLTQVRTFLKQVGLNLTGGDTPSASDYQTLMQQIKMRPDAALLQTMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILQGKKYEPKLSDKTVLNTNVSNA
TRKQQAKDKAEGKPKKTDLTIWDALGVHCSANERRADEASRDVEAWLKCYFMQDKLGEEF
TGTITGVTTFGVFVQLDTLFVEGLVHVTELGTDYFQYDDARHELRGERTGKRYQLTDRLT
VQVARVDLETRKIDLRLVTDAELAGEEAPAKPNGSGKRKGEKKSMVKPGPATEQRHEIKT
SVKAGHGSNGAKPAGKAQAKAAPKVAAPKAAPKGEPKRSKKPAAAPAAAAPRAAKTVSKS
SKNKR
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaaaatacccacaccatccccagccgggaggacattctcggcatattccgcagc
gtcaacgcgcctctcgatccgcagtctctcgggaaaacgctgcaagtgcatgccgattcc
atggatgtcctggtccgtcgcctgaaggcgatggagcgcgacggccagctcaagtctgat
gccggcggcgtgttcgcgctggccgaccagagcgcgctcgtcgccggtcgcgtcaccagc
caccgcgatggattcggtttcgtcattcccgacgacgccagcgccgacctgttcctgcct
gagaaagaaatgcagaaagtactgcatggcgacaaggtcatggcccgcatcgtcggcacc
gaccgccgcggccgtccggaaggcacgatcgtggaagtcacgcagcgcgccaatacccac
gtcatcggccgcctgatccaggaaaacggcacctgggtcgtggcgccggaagaccagcgc
atcggccaggacattttagtgaccggttcgctgggcaaggcgaaggccggccagatcgtc
agcgtcgagctgaccgagcagccgatgcgcttcaagcagcccgtcggcaagatcgtcgaa
gtgctcggtgccctggacgaccccggcatggaaatcgagattgccgtgcgtaaattcaac
gtgccgcacatcttttccgccgccgccctcaagcaagctgaaaaactgccgttcgaagtg
cgtgccgccgacctgaaagaccgtgtcgacttgcgcgacgtgcccttggtcaccatcgac
ggcgaagacgcgcgcgatttcgacgatgccgtgtattgcgagcccgtcaagatcggccgc
gccaactgcttccgcctgatcgtcgccatcgccgacgtcagccattacgtgaaaccgaac
gacgcgctcgatgccgacgcgctcgaacgcagcacgtccgtctacttcccgcgccgcgtg
atcccgatgctgccggaaaagctgtcgaatggcctgtgctcgctgaacccggccgtcgac
cgcctgaccctcgtctgcgacgccgtcgtcagcgacaagggcgaattgaaggcgtaccag
ttctacccggccgtcatccattcggccgcgcgcttgacgtatgacgaagtggccgccgta
ctgggcaacaccaaggggccggaagcggcacgccgcgccgacatcctgccgcatttgcag
aacctggaagccgtctaccgcgccttgctgaaggcgcgcacggagcggggcgccatcgat
ttcgagacgacggaaacgtatatcgtctgcaatagcgccggcaagatcgaaaagatcatt
ccgcgcacgcgcaacgaagcgcacaagatcatcgaagagtgcatgctggcggccaacgtc
tgcgcggccgatttattgctgcgcaacaagcacccaggcacctaccgcatccacgccagc
ccgaccaaggaaaagctcacgcaagtgcgcaccttcctcaagcaggtcggcctgaacctg
acgggcggcgacacgccatcggcatccgattaccagaccttgatgcagcagatcaagatg
cgtcccgacgcggccctgctgcaaacgatgttgctgcgctcgatgcagcaagccgtctac
agcccggataatatcggccacttcggcctggcgtacgaggcgtatgcccacttcaccagc
ccgatccgccgctacccagacctgttgacgcaccgcgccatcaaggccatcttgcaaggc
aagaaatacgagccgaagctgtcggacaagaccgtgctgaacacgaacgtgtcgaacgcc
acgcgcaagcagcaggcgaaggacaaggccgaaggcaagccgaagaagacggatctgacc
atctgggatgcgctgggcgtgcattgctcggccaacgaacgtcgcgccgatgaagcgtcg
cgcgacgtcgaagcatggctcaagtgctacttcatgcaggacaagctgggcgaggaattc
accggcacgatcaccggcgtgaccacgtttggcgtgttcgtgcaactcgacaccctgttc
gtcgaaggcctggtgcacgtcaccgaactgggcaccgactacttccagtacgacgatgcg
cgccacgaactgcgcggcgaacgcacgggcaagcgttatcaattgacggaccgcctgacg
gtgcaagtggcaagagtcgacctggaaacgcgcaagatcgacctgcgtttggttaccgat
gcggaactggcgggcgaagaagcgcctgccaagccgaacggcagcggcaagcgcaagggc
gaaaagaaatccatggtcaagcccggtcccgcgaccgagcagcgccatgagatcaagacc
agcgtcaaggctggccatggcagcaatggcgccaagcctgcaggcaaggcgcaagccaag
gccgcaccgaaggtagcagctcccaaggccgcgcccaagggcgagccgaagcgcagcaag
aaaccagccgcggcacccgccgcggcggcaccacgtgcagcaaaaactgtatcaaaatca
agcaagaacaagcgataa
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