Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_23975
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Entry
YQ44_23975 CDS
T04539
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jaz
Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YQ44_23975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jaz03019
]
YQ44_23975
03009 Ribosome biogenesis [BR:
jaz03009
]
YQ44_23975
Enzymes [BR:
jaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YQ44_23975
Messenger RNA biogenesis [BR:
jaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YQ44_23975
Ribosome biogenesis [BR:
jaz03009
]
Prokaryotic type
rRNA helicases
YQ44_23975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
APA70337
UniProt:
A0A1I9Y2U5
LinkDB
All DBs
Position
complement(5529523..5531667)
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AA seq
714 aa
AA seq
DB search
MSDTPISLFSDLQLSEPLVRALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAA
FALPILSRIDLKQSSPQALVLAPTRELAIQVAEAFQVYAAHIPGFHVLPIYGGQSYGPQL
SALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQETPE
GHQTALFSATMPSVIKRIATTYLVNPAEVTVAAKTGTADNIRQRYWLVSGMHKLDALTRI
LEAEAFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQAQRERTIQQLKDGKIDIL
VATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKNLLKA
IERSTRQPIGMLELPTIQAVNDVRIAKFKEQISETLALGELEQFQSLIEDFEREQNIPAI
EIAAALAKMARGNVPLLLDKNKAREQATWQDDRPVRQDRFERNDRPERGDRFDRNERSER
PAFPKKERISRPADAGMQTFRIEVGHQHGVKPGNIVGAIANEAGIDSKNIGRIEIYDDYS
VLDLPDSMPKELLDQLKTVWVAGQQLRISRDGDAPDLAPPAAPRKPFAAKSAPAFKDAPA
DAGDAPVRAPKKERPRPGVTAYRIEVGREHAVTPSNIVGAIANEANLEAKHIGRIDIFDN
YSVLDLPEGMPPEILDHLKSVVVSGQKLRISLDDGTTERKPAPPRPKSPRKTFK
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacaccaatttccttattttccgaccttcaactgagcgagccgctggttcgc
gcgctcaaggatgtcggttacgaaacaccgtcgcctatccaggcggccacgattccatta
ttgctcgccaaccgcgacgtgctgggccaggcgcaaacgggcacgggtaagaccgccgcc
ttcgccttgcctatcctgtcgcgcatcgatctgaaacaaagctcaccccaagccctggtc
ctggcaccgacgcgcgaactggccatccaggtcgccgaagcgttccaggtgtacgccgcc
cacattcccggcttccacgtgctgccgatctacggcggccaaagctacggcccgcagctg
tcggcgctgcgccgcggcgtgcacgtcgtcgtcggcacgccgggccgcgtcatcgatcac
ctggacaaggggtcgctcgacctgtccaagctcaaaaccctggtactcgacgaagccgat
gaaatgctgcgcatgggctttatcgacgacgtcgaacgcatcttgcaagaaacgccggaa
ggccatcaaacggccctgttctcggccaccatgccttccgtcatcaagcgcatcgccacg
acctacctggtcaatccggccgaagtgacggtcgccgccaagacgggcacggccgacaac
atccgccagcgctactggctggtgtcgggcatgcacaagctcgacgcgctgacccgcatc
ctggaagcggaagcgttcgacggcatgatcatcttcgcccgcaccaagctgggtacggaa
gagctggccggcaagctgcaggcgcgcggtttctcggctgccgccatcaatggcgacatc
cagcaagcgcagcgcgagcgcacgatccagcagttgaaagacggcaagatcgacattttg
gtcgcaaccgacgtggccgcccgcggcctggacgtcgagcgcatcagccacgtcgtcaac
tacgacgtgccgcacgatccggaaagctacacccaccgcatcggccgcacgggccgcgcc
ggccgcagcggcgaagcgattttgttcatcactccgcgtgaaaagaacttgttgaaagcc
atcgaacgctcgacccgccagccgatcggcatgctggaactgccaacgatccaggccgtc
aacgacgtgcgtatcgccaagttcaaggaacagatcagcgaaaccctggccctgggcgaa
ctggagcagttccagtcgctgatcgaggatttcgagcgcgaacagaatatccctgccatc
gaaatcgccgccgccctggcgaagatggcgcgtggcaatgtgcctttgttgctggacaag
aacaaggcgcgcgagcaagccacgtggcaggatgaccgtcccgtgcgccaagaccgcttc
gaacgcaacgaccgtccggaacgcggcgaccgtttcgaccgcaacgagcgcagcgaacgc
ccggccttcccgaaaaaggaacgcatttcgcgtccagccgacgccggcatgcagactttc
cgtattgaggtaggtcatcaacatggcgtcaaaccgggcaatatcgtcggcgccatcgcc
aacgaagcgggcatcgattcgaaaaacatcggccgcatcgaaatctatgacgactacagc
gtcctggatttgccagacagcatgccgaaagaattgctggaccagctgaagaccgtgtgg
gtggcgggccagcaactgcgcatcagccgcgatggcgatgcaccggacctggcgccgcca
gccgcgccgcgcaagccgttcgccgccaagtcggcgcccgcattcaaggatgcaccggcc
gacgcgggcgatgcgccagtgcgcgcaccgaagaaggaacgtccacgcccgggcgtgacg
gcgtaccgcatcgaagtgggccgcgagcacgccgtgacgccaagcaatatcgtcggcgcc
atcgccaacgaagcgaacctggaagccaagcatatcggccgcatcgacatcttcgacaat
tacagcgtgctggacttgccggaaggcatgccgccggaaatcctcgaccacctgaaatcg
gtcgtcgtctcgggccagaagctgcgcatcagcctcgacgatggcacgacggagcgcaag
cctgcgccaccgcgtccgaagtcgccgcgcaagacctttaagtaa
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