Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_24680
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Entry
YQ44_24680 CDS
T04539
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
jaz
Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
jaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YQ44_24680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jaz03400
]
YQ44_24680
Enzymes [BR:
jaz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
YQ44_24680
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
YQ44_24680
DNA repair and recombination proteins [BR:
jaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
YQ44_24680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
APA70458
UniProt:
A0A1I9Y366
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All DBs
Position
5690204..5691040
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AA seq
278 aa
AA seq
DB search
MPELPEVEVTRRGVAPHLEGRAVRSVVLRRDGLRWPFPPALGEQLSGQTIGLTGRRGKYL
LIHFRHGTLIIHLGMSGHLRVLPAGTEAQKHDHFDLVVEDADGASQVLRMTDPRRFGAVL
WHDEADGPLDSHVLLRGLGTEPLEGGFTGQLLFEKTRNKGSSIKQVLMAGDIVVGVGNIY
CSESLFRAGINPKTPAKRIGLARYEKLAQAIRDVLAEAIVQGGSTLRDFIGVNGQSGYFQ
QTYFTYNRTGKPCRVCGAPIRQIVQGQRSTFYCVHCQK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccagaagtcgaagtcacacggcgcggtgtcgcgccccatctcgaagga
cgcgccgtgcgctccgtcgtgctgcgccgcgacggcctgcgctggcccttccctcccgcc
ctgggcgagcaattgtcgggccagaccatcggcctgacggggcggcgcggcaaatacctg
ctgatccacttccgccacggcaccctgatcatccacctgggcatgtcgggccacctgcgc
gtgctgccagctggcaccgaggcgcaaaagcacgaccatttcgacctcgtcgtggaagac
gcggacggcgccagccaggtgctgcgcatgacggatccgcgccgcttcggcgccgtgctg
tggcacgacgaggccgacggcccgctcgacagccacgtgctgctgcgcggcctgggcacg
gaaccgctggagggcggcttcacgggccagttgctgttcgagaaaacgcgcaacaagggc
agcagcatcaagcaggtgctgatggcgggcgacatcgtcgtcggcgtgggcaatatctac
tgttccgaaagcctgttccgcgccgggatcaacccgaagacgccagccaagcgcatcggc
ctggcgcgctatgagaaactggcgcaggcgatccgcgacgtgctggccgaagccatcgtg
caaggcggcagcaccctgcgcgacttcatcggcgtaaacggccagtccggctacttccag
cagacgtatttcacgtacaaccgcacgggcaagccatgccgcgtgtgcggcgcgccgatc
cggcaaatcgtgcagggccagcggtccacgttttactgcgtgcattgccaaaagtaa
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