Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_25165
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Entry
YQ44_25165 CDS
T04539
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jaz
Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YQ44_25165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jaz03021
]
YQ44_25165
03400 DNA repair and recombination proteins [BR:
jaz03400
]
YQ44_25165
Enzymes [BR:
jaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YQ44_25165
Transcription machinery [BR:
jaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YQ44_25165
DNA repair and recombination proteins [BR:
jaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YQ44_25165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
PYNP_C
Myosin_VII_N
Motif
Other DBs
NCBI-ProteinID:
APA70545
UniProt:
A0A1I9Y3F3
LinkDB
All DBs
Position
complement(5804465..5808706)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMMFPDVSEVIRAYDNK
EVELTTRVTVRITEYPKNAETGEFEKTVTRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISICVDDMLVPPQKVTLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVIRRDGTKSTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTMNGAVMKALVEGGEVIEPLRDRI
LGRVVVHDVVNPETQETLYEAGTLMDEDMVEEIERLSIDEVKVRTPLTCDTRFGLCAKCY
GRDLGRGMLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMVIKAGTALA
TWDPLTRPIITEYAGQVRFENVEEGVTVARQVDEVTGLSTLVAIDAKRRGSLTKTLRPQV
KLINDANEEVKIAGTEHSVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVNAGDTNYIVGEQVERSELLDENDRMAVENKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEVEE
RQALLLAEKASLAGEAAEALQDIEIQQHHGDEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtacagaccaacgagaccttcgatgcaatc
aagatcggtctcgcttcgcctgagaaaatccgttcgtggtcctacggcgaagtcaaaaag
ccggaaaccatcaactatcgtaccttcaagcctgagcgcgacggcctgttctgcgccaag
atctttggcccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaaacac
cgcggcgtgatctgcgaaaagtgcggcgtcgaagtcacgctggccaaggtgcgccgcgag
cgcatgggtcacatcgagctggcctcgccaaccgcgcacatctggttcctgaaatcgctg
ccgtcgcgtctgggcatggtcctggacatgaccctgcgggacatcgaacgcgtgctgtac
tttgaagcatacgtcgtgaccgatccaggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgccttcatg
ggcgccgaaggtatccgtgaactgctgcgctcgatcgacatccaccgcgatgccgaaacc
ctgcgcgtggaactgaaggaatcgaaatccgaagccaagatcaagaaatacgcgaagcgc
ctgaaagtgctggaagcgttccaacgttcgggcatcaagcctgactggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgtccgctggtaccgctggatggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaaa
cgcctgatggagctgcgcgctccagagatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcggtcgattcgctgctggacaacggccgtcgcggcaaagcgatgaccggcgccaac
aagcgtccgctgaaatcgctggcagaaatgatcaagggcaagggcggccgtttccgtcaa
aacttgctgggcaaacgcgtcgattactccggtcgttcggtcatcgtcgtgggcccgcaa
ttgaaactgcatcagtgcggcttgccgaaactgatggcgctggaactgttcaaaccattc
attttcaataaactggaactgatgggtctggcgaccacgatcaaggccgctaaaaagctg
gtcgagattcaagagccggtcgtgtgggacatcctggaagacgtgatccgtgaacatccg
atcatgttgaaccgcgcacctacgctgcaccgcctgggtatccaggccttcgagcccgtc
ctgattgaaggcaaggccatccagctgcatccgctcgtctgcgccgcattcaacgccgac
tttgacggtgaccaaatggcggtccacgttcctctgtcgatcgaagcgcagatggaagca
cgcaccctgatgctggcatcgaacaacatcctgttcccatcgaacggcgaaccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaatgcg
aagaacgaagggatgatgttccctgacgtgtcggaagtgatccgcgcctacgacaacaag
gaagtcgaactgacgacccgcgtcaccgtgcgtattaccgaatacccgaaaaacgccgaa
acgggcgaattcgagaaaacggttacccgctacgaaacgacgatcggccgtgcgatcctg
tcggaaatcctgcctaagggcctgcctttctcggtgctgaaccgcgcgctgaaaaagaaa
gaaatttccaagctgatcaacacgtcgttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgcagacaaactgatgcaatcgggtttccgcctggcgacacgcgccggtatctcgatc
tgcgtcgacgacatgctggtaccgcctcaaaaagtcaccctgatcgcgacggccgaatcg
gaagtcaagcagatcgaacagcaatacgcctcgggtctcgtgaccgccggcgagcgttac
aacaaggtcgtcgatatctggggcaagacctcggatgaagtcggcaaggccatgatggac
cagctcaaagtcgaagacgtgatccgccgcgacggcaccaagtcgacgcaagaatcgttc
aacgccatttacatgatggccgactccggcgcgcgcggttccgcagcccagattcgtcag
ttggccggtatgcgtggtctgatggcgaagccggatggctcgattatcgaaacgccgatt
accgcgaacttccgcgaaggtctgaacgttttgcagtacttcatttcgacccacggtgca
cgtaaaggtctggccgatacggcgctgaaaacggctaactccggttacctgacgcgtcgt
ctggttgacgtgacgcaagatctggtggtgatcgaggacgattgcggcaccatgaacggc
gccgtcatgaaggcactggtcgaaggtggtgaagtcatcgaaccgttgcgcgaccgtatc
ctcggccgcgtggtggtgcatgacgtcgtcaatcctgaaacccaggaaacgctgtacgaa
gccggcaccctgatggacgaagacatggtcgaagagatcgagcgtctgtccatcgatgaa
gtcaaggtccgcacgccactgacttgcgacacgcgcttcggcctgtgcgccaagtgctat
ggccgcgacctgggccgcggcatgctggtcaacgccggcgaagccgtcggtgtggtggca
gcgcagtcgattggtgagccgggtacccagctgaccatgcgtacgttccacattggtggt
gcggcatcgcgtgcggcagtggcatcgtcggtcgaagccaagtcgaacggtaccatccgc
ttcacggcaaccatgcgttacgtgacgaacggcaagggcgcgcaaatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccatggccgtgagcgtgagcgtcataaagtaccg
tacggtgcgaccctgatcgtcaaggacggcatggtcatcaaggccggtacggccctggca
acgtgggatccgctgacccgtccgatcattaccgaatacgccggtcaagtgcgtttcgag
aacgtcgaagaaggcgtcaccgtggcccgtcaggtcgacgaagtgaccggtctgtccacc
ctggtggcgatcgatgcgaagcgtcgcggttcgctgaccaagaccctgcgtccgcaagtc
aagctgatcaacgacgcgaacgaagaagtcaagatcgccggcaccgaacactcggtggcg
atcggcttccaggtcggcgcgctgatcatggtgaaggacggtcaacaggtatcggttggt
gaagtgctggcacgtattcctaccgaatcgcaaaaaacgcgcgatattaccggtggtctg
ccacgcgttgcggaactgttcgaagcgcgctcgccgaaagatgccggtatgctggcggaa
gtcacgggtacggttgcgttcggtaaagaaaccaagggcaagcagcgtctggaaatcacg
gacatggacggcaacaagcatgagttcttgatcaccaaggacaaacaagtgctggtgcat
gacggccaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccacaagac
atcctgcgcctgctgggtatcgaagcgctggcacgttacatcgtcgacgaagtgcaggac
gtgtaccgtctgcaaggcgtgaagatcaatgacaagcacatcgaagtgatcgtgcgtcag
atgctgcgccgcgtacagatcgtcaatgccggcgacaccaactacatcgttggcgagcag
gtagagcgttcggaactgctggacgagaacgatcgcatggccgttgagaacaagattcca
gcgacctacgaaaacgtcttgctgggtattaccaaggcatcgctgtcgaccgattcgttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggt
aagcgcgatggtctgcgcggcctgaaagagaacgtcatcgtcggccgtctgattcctggc
ggtacgggcctggccttccaccgcgcacgcaaagagaaagaagcgtgggaagtggaagag
cgtcaagccctgctgctggccgagaaagcctcgctggctggcgaagctgccgaagcgctg
caagacatcgaaatccagcaacaccacggcgacgaagcgtaa
DBGET
integrated database retrieval system
