Janibacter cremeus: O9K63_08895
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Entry
O9K63_08895 CDS
T08913
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
jcr
Janibacter cremeus
Pathway
jcr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
jcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
O9K63_08895 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jcr03400
]
O9K63_08895 (ligD)
Enzymes [BR:
jcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
O9K63_08895 (ligD)
DNA repair and recombination proteins [BR:
jcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
O9K63_08895 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WEV76724
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All DBs
Position
1899975..1900859
Genome browser
AA seq
294 aa
AA seq
DB search
MADSRGSVTRVEVAGRTLRVSSLEKVMYPATETTKGEILAYYARAGETILAHLARRPVTR
VRWPHGTGGESFFEKNLPSGAPSWLPRVQVDDVTFPLVEDLAQLTYLVNLNSIELHVPQW
RVDEDGARLNPDRLVIDLDPGKPAGLHECARVALLLRERLGRLGLDLYPVTSGSKGMQLY
APLGGDLTSNQVRDLAQQLAQEMTKNHPDLVLWKMTKSLRPGKVFLDWSQNVAAKTTVCP
YSMRGRDDPWVAAPRTWDEVEAGAEDAEALQQLGFDEVLVRLEEHGDPLEPLLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggctgactcccgcggaagcgtcacccgggtcgaggtggccgggcgcacgttgcgcgtg
tcctcgctggagaaggtcatgtaccccgccacggagacgacgaagggggagatcctcgcc
tactacgcccgggccggcgagacgatcctcgcgcacctcgcccggcgtcccgtgacgcgg
gtgcggtggccgcacgggaccggcggcgagagcttcttcgagaagaacctgccctccggg
gcgccgagctggctgccgcgggtgcaggtggacgacgtgaccttcccgctcgtggaggac
ctcgcccagctgacctacctggtcaacctcaacagcatcgagctgcacgtcccgcagtgg
cgggtggacgaggacggcgcacggctcaaccccgaccggctggtcatcgacctcgacccg
ggcaagccggccgggttgcacgagtgcgcccgggtcgccctgctgctgcgcgaacgcctg
gggcgcctggggctcgacctgtacccggtcacctccggcagcaaggggatgcagctctac
gccccgctcggcggtgacctcacgagcaaccaggtgcgcgacctcgcccagcagctggcg
caggagatgaccaagaaccaccccgacctggtgctgtggaagatgaccaagtcgctgcgc
ccggggaaggtcttcctcgactggagccagaacgtcgcggccaagaccaccgtctgcccg
tactcgatgcgcggtcgggacgacccgtgggtggcggcgccgcgcacgtgggacgaggtc
gaggccggggcggaggacgcggaggcgctgcagcagctgggcttcgacgaggtcctcgtc
cggctcgaggagcacggcgacccgctcgagccgctgctgccctga
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