Jatropha curcas (Barbados nut): 105628183
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Entry
105628183 CDS
T03922
Name
(RefSeq) protein GAMETOPHYTE DEFECTIVE 1 isoform X1
KO
K03539
ribonuclease P/MRP protein subunit RPP1 [EC:
3.1.26.5
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105628183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
jcu03009
]
105628183
03016 Transfer RNA biogenesis [BR:
jcu03016
]
105628183
03029 Mitochondrial biogenesis [BR:
jcu03029
]
105628183
Enzymes [BR:
jcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
105628183
Ribosome biogenesis [BR:
jcu03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
105628183
Transfer RNA biogenesis [BR:
jcu03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
105628183
Mitochondrial biogenesis [BR:
jcu03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
105628183
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_P_p30
Motif
Other DBs
NCBI-GeneID:
105628183
NCBI-ProteinID:
XP_012064940
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MGFFDLNIPYEASNSSKDTREKIVRKTMELGYTGIAYNRTIKGVMSDRDSCSISPFSFNT
LLNVPPSLAYNIFSVNFHRDLLGIPRSSPFRQYTRLTVCVDSPAQCQALNGGNPILKSYD
LIAVRPLNQSAFDIACEKLEVDIIAIDFSKKLPFRLKLPMVKAAMERGVYFEITYSDLIV
SVEIRSQMISNAKLLVDWTRGRNLILSSAAPSVYEIRGPYDVMNLTSLLGLSVERAKAAL
SKNCRNLIVNALKKKHFYKEAIRVELISSDEKSDSKGPLSAAWLKWDPISSGEGDLQLED
IEKSFTATTRVSNSVKPIDFVSIINSIPSHGGNFLTAAKTVEVPANEAAEMPFMATGVSE
KLGSNSPSKSKAFDRGTSQELLVPSDDSKTSINSEDIRFPTNNTDEVPKNLNNSNALLPP
ILTPKHDLQSQKNIISCELNTVMPNEDVMRQTPLEIGLATICAADNEMENISENRDFLSL
HVEKSRSSQGSDAVLGAQNVVMGKNMSEMSVRDQEGTSVTENILGREELMESADDMIIFD
GNVPFLFTSGDMKVKDSKETMKEAAMEEQEHGDVNLETCKEVAVEEQEHGDVNLETCKEV
AVEEQEHRDADLDTPKEVALEEQEHGDVDIQGVLGQDSGFDVKRSSSGANFMLLQEVPIE
EQKHEEADSESNCPTLVSSLSGKNNGKHRATRQPLLFPLKRLLNPISFKKKSKKFRHKRK
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggggttcttcgacctcaacatcccgtatgaggcctccaattcctcaaaagacacgcgc
gaaaagatagtaagaaaaaccatggagctaggctatactggaatcgcttacaatcgcacg
atcaagggcgtgatgtccgatcgggacagttgctctatttcgcctttctcttttaatact
ctcttaaatgttcctccttcacttgcatacaacatcttctccgttaattttcaccgcgac
cttctcggtattccacgctcctcaccttttcgtcagtacacgcgcttgactgtctgtgtt
gatagtcccgctcagtgtcaggcgcttaatggtggcaatccaattttgaagagttatgat
ttgattgctgttaggcctcttaatcagagcgcttttgatattgcttgtgagaaattagag
gtcgatataattgctattgatttctcaaagaagttgccatttagattgaagctgccaatg
gttaaagctgctatggaacgtggggtttactttgaaattacatactctgatcttattgtg
agtgttgaaatcagaagccaaatgatatcaaatgctaagttactggtggattggactcga
ggaaggaatcttattttatcaagtgcggctccttctgtgtatgaaattagagggccatat
gatgtcatgaatttaacatctttgcttgggctctctgttgaacgagctaaagcagctctt
tccaagaactgtaggaatcttatagttaatgctttaaagaaaaagcacttctacaaggaa
gctattagggttgaactaatatcatctgatgaaaaatctgactccaagggacctttatct
gcagcctggcttaaatgggatcccatctctagtggtgaaggggatttgcagctagaggat
atagaaaagtctttcactgccaccactagagtatccaattctgttaaacccattgatttt
gtttcaattattaacagcatcccatctcatggtggaaattttttgactgctgctaagaca
gttgaggtacctgctaatgaggcagctgagatgccatttatggcaactggagtgtctgaa
aaacttggcagcaattctccgtcaaagagtaaggcttttgatcgtggaacctcccaagag
ttacttgtgcctagtgatgattcaaaaacctcaattaattcggaggatattagattccct
acaaacaacactgatgaagtgccaaaaaatttgaacaactcaaatgcattgcttccccct
attttaactccaaagcatgatttgcaatcacaaaagaacatcattagttgtgaattaaac
actgtgatgccaaatgaggatgtaatgcgtcagacacctttagaaattgggttagcaact
atttgtgctgctgataatgaaatggaaaatatttctgagaacagagactttctttctctt
catgtcgaaaagtctaggagttcacaaggttccgatgcagttttaggagcacaaaatgtt
gtgatgggcaaaaacatgtcagagatgagtgtgagagatcaggaaggtacatctgtaact
gaaaatatattgggtagagaagaactcatggaatcagctgatgatatgataatatttgac
ggcaatgttccttttctgtttacctctggtgatatgaaagttaaagatagcaaggagact
atgaaggaggcagcaatggaagagcaagagcatggagatgtaaatctcgagacatgcaag
gaggtggcagtggaagagcaagagcatggagatgtaaatctcgagacttgcaaggaggtg
gcagtggaagagcaagagcatcgggatgcagacctagatacccccaaggaggtggcactg
gaagagcaagagcatggagatgtggatattcaaggtgttcttggtcaggacagtggtttt
gatgttaaacgtagttcttcaggtgcaaattttatgctcttgcaggaggtgccaatagag
gaacaaaagcatgaagaagctgattctgaaagtaattgtccaactttggtctcatcctta
tcagggaaaaacaatggaaagcacagagcaactcgtcaacctcttttatttcctctgaag
cgtttattgaatcccatctctttcaaaaagaaatctaagaagtttagacataagaggaag
gtgtga
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