Jatropha curcas (Barbados nut): 105628189
Help
Entry
105628189 CDS
T03922
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105628189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105628189
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105628189
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105628189
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
105628189
NCBI-ProteinID:
XP_012064947
UniProt:
A0A067L6T2
LinkDB
All DBs
Position
Unknown
AA seq
664 aa
AA seq
DB search
MSGLLNSSLNSSASNLPDSTGRSFATSFSGQSGAASPVFHHTGTIQGLHNIHGSFNVPNM
PGTLTSRNTAVNNIPSGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFSSNTNGVGGSIPGILPTSAGIGNRNAVPGLGVSPILGNAGPRITSSMGNMVG
GGNIGRSISSGGALSVPGLSRLNLSANSGSGSLSVQGQNRLMGGVLPQGSPQVISMLGNS
YPTAGGPLSQSHVQAVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLG
SLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYTMDLHQKEQLHDNTISMMQSQ
HFPMGRSSGFNLGGTYSSYRPQQQQQHAPAVSSSGVSFSSVNNQDLLHGSDIFPSSHSTY
HSQTNGPPGIGLRPLNSPNTVSGIGSYDQLIQQYQQHQNQSQFRLQQMSAVNQSFRDQSM
KTMQTAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNAAENLHKTFGSPWS
DEPAKGDPEFSVPQCYYAKQPPALHQGYFAKFTVETLFYIFYSMPKDEAQLYAANELYNR
GWFYHKEHRLWFIRVPNVEPLVKTNTYERGSYHCFDPNTFEIIRKDNFVVHYEVLEKRPA
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttacttaattcttcgcttaacagttcagcttcaaatcttccagacagcact
ggacgttcttttgctacttctttctctggtcagtctggtgcagcatctcctgtttttcat
catactggtactattcaaggcctacataatatccatgggagctttaatgttcccaacatg
cctggtaccctcacatcaaggaacacagcagtaaataatattccttccggtggagttcaa
caacctaccggaagcctctctagtgggcgctttgcatctaataatcttcctgttgctctc
tctcagttatctcatggtagctctcatggacattcaggagtcacgaatagaggaggtata
agtgttgtagggaaccctggatttagtagtaacacaaatggagttggaggttctattcct
ggaattcttcccacctctgctggtattggtaaccggaatgctgtgccaggattgggagta
tcgccaattttggggaatgcaggtcctcggattacaagttctatgggaaacatggttggc
gggggtaacatcggcaggagcataagctcaggtggagcattatccgtgcctggtctatct
cggttaaatctaagtgctaatagcggatctggaagtttaagcgtccaaggacaaaataga
ttaatgggtggtgtgcttccacaaggatctccgcaggtaatttctatgttgggaaattcc
tatcccactgctggtggtcctctttcgcaaagccatgtccaagcagtgaacaatcttagc
tccatgggaatgttgaatgatgtcaactccaatgacagttctccgtttgacataaataat
gatttccctcagttgacaagtcgccctagttctgctggaggtccacaaggacaattgggt
tcattaagaaaacaaggtcttggagttagccctattgttcagcaaaaccaagagttcagc
atccaaaatgaagattttccagctttaccaggatttaaaggtggtaatgctgattacaca
atggatttgcatcaaaaagaacaactgcatgacaatactatatcaatgatgcaatctcag
cacttccctatgggcagatcttctggattcaacttaggtggaacttattcatcttatcgt
ccacagcagcaacagcaacatgctccagctgtcagtagtagtggtgtctccttttcatct
gtaaacaatcaagatcttcttcatggttcagatatatttccatcttcacattcaacctat
cactcgcagaccaatggaccacctggaatcggactgagacctctaaactcaccaaatact
gtttcgggtattggatcgtatgaccagctcatccagcaatatcaacaacaccagaaccag
tctcagttccgtttacaacaaatgtcagctgtcaaccagtcatttagggatcagagcatg
aaaaccatgcagactgcacaatctgctccagatccatttggcttacttggcttgctaagc
gttattaggatgagtgaccctgatctgacctccctggcacttggaattgatttaacaact
cttggattaaatttgaatgcagcagaaaatcttcacaagacatttggttctccatggtct
gatgagcccgctaagggtgatccagagtttagtgtgcctcaatgctattatgcgaaacaa
cctcctgctctacatcaaggctactttgcgaaattcacggttgaaacattgttttatata
ttttacagcatgccaaaagacgaggctcaattatatgctgcaaatgaactttataacaga
ggttggttttatcacaaagagcaccgattgtggttcataagagttcccaatgtagagcca
cttgttaagacaaacacatatgagagaggatcttaccactgtttcgatccaaacacattt
gaaataatccgcaaggataattttgttgttcattacgaggtattggaaaagagaccggct
ctacctcaacattaa
DBGET
integrated database retrieval system
