Jatropha curcas (Barbados nut): 105628230
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Entry
105628230 CDS
T03922
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105628230
09122 Translation
03013 Nucleocytoplasmic transport
105628230
03015 mRNA surveillance pathway
105628230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105628230
03041 Spliceosome [BR:
jcu03041
]
105628230
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105628230
TREX complex
105628230
Spliceosome [BR:
jcu03041
]
Complex C
Other components
EJC/TREX
105628230
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105628230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
105628230
NCBI-ProteinID:
XP_037494554
LinkDB
All DBs
Position
Unknown
AA seq
234 aa
AA seq
DB search
MSLDDINQEAIRALDRLLTTWQHDMFNGSRVWDTTDKEAGLAIETGTKLYIFLIRLASQN
EDIKYFEENQDADNSYWFVLNPELFLLGIVSESLGTAEVVLLSTNRCLAAVKRYNVPNLM
GRPMKIEICGNIGYFAASFSWGKERGGAVGRQRGGSGGGRGFWKRSWSGRGGRGRGRGEK
VSAEXSDADLEKYISELMQTKLNAFLLFLGWTFNPLFWLFSYANGGSTTPTAVL
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttgacgatattaatcaagaagcaataagagccctggatcggctcctgacgacg
tggcagcacgatatgtttaacggatcaagggtatgggatacgacggacaaggaggccggg
ctcgctattgagactgggacgaagctttacatcttcttaattagattggcgtctcaaaac
gaggatattaagtattttgaagagaaccaagatgctgataattcatattggtttgtttta
aatcctgaattattcttactcggaattgtttctgaaagtttgggtacggcagaagttgtt
cttctctcgacgaacagatgccttgctgctgtgaagagatacaatgttcccaacttgatg
ggaagaccaatgaagatagagatttgtggaaatattggctactttgctgcatccttcagc
tggggcaaggaaagaggtggtgcagtggggcggcaacgtggtggcagtggcggtggccgt
ggattttggaagaggtcgtggagtgggaggggcgggcgggggcggggccgtggtgaaaag
gtatccgcagaatgatctgatgctgatctggagaaatacatttctgagctaatgcagacc
aaattaaatgcttttcttttgtttcttggttggacgttcaaccctctattttggcttttt
tcatatgctaatggtggttcaacaaccccaactgctgttctgtaa
DBGET
integrated database retrieval system