Jatropha curcas (Barbados nut): 105629272
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Entry
105629272 CDS
T03922
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105629272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jcu03041
]
105629272
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105629272
Spliceosome [BR:
jcu03041
]
Complex C
Other components
Step II factors
105629272
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
AAA_22
DEAD
AAA_19
nSTAND3
HA2_N
UvrD-helicase
Sigma54_activ_2
TsaE
PhoH
ABC_tran
AAA_16
AAA_24
AAA_30
NB-ARC
AAA_33
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
105629272
NCBI-ProteinID:
XP_037491540
LinkDB
All DBs
Position
Unknown
AA seq
605 aa
AA seq
DB search
MRAEDRFELTQLIASGVCNKRDYPIPLFDNQEENDVEVEEDFDVELNDDEPFFLRGKTSR
STGVDMSPVKIFINPEGSLTRAALLQSALVKERRQIREEQKRILVSMPKDLNRSWEDPVP
EIGARCLAHEVKDFLGLSGYTIPEWKKEVFGKACCFGKKSNSSIEEQRKSLPIYKLKKEL
VKAVNDNQVLVVIGETGSGKTTQITQYLAEAGYIAHGKIGCTQPRRVAAISVAKRVAEEF
GCRLREEVGYAVRFDDCTGPNTVIKYMTEGFLLREILIDSDLSQYSVIMLDEAHERTIYT
DVLFGLLKKLLKRRSDLRLIVTSATLDAEKFSEYFFNCNIFTIPGRSFPVEILFTKEPES
DYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACETLDNRRKELGNNIPDLIILPIYS
ALPGDMQSRIFEPTPAGKRKVVVATNIAEASLTIDGIFYVIDPGFMKQNVYNPKLGVESL
LITPISQASAKQRAGRAGRIGPGKCYRLYTENAFRNEMSPTATPEIQRINLAEIVLSMMA
MGVRDVSCFDFMDSPSFQTFVSAMDQLYGLGALDEEGILTKTGLGKNKLEQMRRGVTFSI
HKGTI
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgagggcagaggataggttcgaattaacccagttaattgcttctggtgtttgtaataaa
agagattatccaattccgttatttgataatcaagaagaaaatgatgttgaagtcgaggaa
gattttgatgtagagttaaatgacgacgaaccgttctttttgcgagggaaaaccagtaga
agtacaggcgttgacatgtcacccgtcaaaatctttataaacccggaaggttcattgact
cgtgcagctttacttcaatctgcgctggttaaagaacgcagacagatccgtgaagaacaa
aaaagaattcttgtttcaatgcctaaagatcttaaccgttcgtgggaagacccagttcct
gaaattggagctaggtgtttagcacatgaagttaaggattttcttggtttgtctggctat
acaatcccagaatggaaaaaagaagtttttggtaaagcttgttgctttggcaagaaatca
aactcgtcaattgaagaacagagaaaaagcttgccaatttataagttgaagaaagaatta
gttaaagctgtgaatgataatcaggtgcttgtagtgattggtgagactggttcggggaaa
actacacagataacccagtatcttgctgaggctggttatattgcacacgggaaaattggt
tgtacacagcctagaagagtagctgcaatttctgttgctaaaagggtagctgaagaattt
ggttgcaggttaagagaggaggtagggtatgctgttaggtttgatgattgtactgggcct
aatactgtgattaagtatatgactgagggatttcttcttagggaaattttgattgatagt
gatctgtctcagtattctgttataatgcttgacgaggctcatgagaggactatttacact
gatgttctttttgggttgcttaagaagcttttgaaaaggagatctgatcttaggttgatt
gtcacttctgctacacttgatgctgagaagttttctgagtacttctttaattgtaatatt
tttactattcctggcagatcttttcctgtggagatactatttactaaagagcctgaaagt
gattatcttgatgcagctcttataacagtcttgcagatccacttgacagaacctgaagga
gatattttgcttttcttaacaggtcaggaagaaattgattttgcatgtgaaactcttgat
aatagaaggaaagaacttggtaataatattcctgacttgattatcttgcctatttatagt
gctcttccaggtgacatgcaatctaggatatttgaaccaactcctgcagggaagaggaaa
gtggttgtagcaactaatattgctgaagcatcattgactatagatggaattttctatgtc
attgatcctggatttatgaaacaaaatgtttataatcctaagttaggggttgaatctttg
cttataacccctatttcacaagcatctgccaagcaacgagctgggcgtgctgggcgtatt
ggccctggaaagtgttaccgtctctatactgagaatgcatttaggaatgagatgtctcct
actgcaactcctgaaatccaaaggattaaccttgcagagattgtgctgtccatgatggct
atgggagtcagagatgtatcctgttttgattttatggattcaccttcattccaaaccttt
gtttctgccatggatcaactatatggtctaggggcattggatgaggaagggattctaact
aaaacaggcctagggaaaaacaagctcgagcagatgagaagaggagtaactttttccatc
cacaaggggaccatctga
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